Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021849
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151...    30   2.4  
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830...    30   2.4  
08_02_1094 + 24275719-24277029                                         29   3.2  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   5.6  
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480...    29   5.6  
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292     28   7.4  
03_05_1147 - 30744180-30744350,30744439-30744924                       28   7.4  
03_02_0036 + 5182345-5183511                                           28   7.4  

>03_06_0259 +
           32712976-32714335,32714454-32714587,32714904-32715144,
           32715254-32715462,32715522-32715583,32715690-32715801,
           32715916-32716208,32716400-32716520
          Length = 843

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 745 NGIQYLDIGLLPSIFSKTFLSLSNIRPEVNYV 650
           NGIQ+L  G++P +F    L ++NI  + N+V
Sbjct: 600 NGIQFLHAGMMPGLFGNN-LKINNILLDQNHV 630


>03_05_0042 +
           20180151-20180468,20181595-20181665,20182929-20183087,
           20183598-20183664,20183913-20184008,20184687-20184733,
           20185113-20185193,20185704-20185806,20185967-20186028,
           20187188-20187302,20193191-20195087,20195206-20195492
          Length = 1100

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 184 RTPVKYQTAAVLVVSGGSSANGEARLQAGVARAASIPIALLYN 312
           RT      AA L V G        R  AG A AAS+P ALL++
Sbjct: 41  RTTTARSPAACLSVGGRRRGAEAVRASAGGAPAASLPAALLFD 83


>08_02_1094 + 24275719-24277029
          Length = 436

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 265 AGVARAASIPIALLYNKLIVSLRTHRTATKGVREGSAVF-RSTERIYSDVVRARFLRK 435
           AGV +A  +    L+N +   L   +     VR  S+   R T   ++D+VR  FLR+
Sbjct: 314 AGVGKANFVEQKELFNSITTFLAGGKAPASSVRASSSHHGRLTASTWTDIVRLNFLRR 371


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 196  KYQTAAVLVVSGGSSANGEARLQAGVARAA 285
            K QTA+ L  SGG    G AR +  VA AA
Sbjct: 1194 KLQTASTLFASGGERGRGRARGRGRVADAA 1223


>03_06_0205 -
           32347636-32347646,32347762-32347801,32347959-32348060,
           32348473-32348599,32348893-32350835,32351347-32351367
          Length = 747

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 663 SGLMLESERKVFEKMDGKSPMSKYWMPLV 749
           SGL  E ERK++E++   + MSK W   +
Sbjct: 206 SGLQEEMERKLYEQISMTNSMSKNWQDAI 234


>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
          Length = 729

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 410 SFVLGFYVSLVVKRWWEQYKLLPWPDTLA-LFISQAYLERSVKTRRAD**EEIL*DTPSS 586
           + V G+  + +VKR  E + ++PW D ++ L +   Y++R    R A    E+    PS 
Sbjct: 132 AMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRK-HVREA---RELFDSMPSP 187

Query: 587 PTS 595
           PTS
Sbjct: 188 PTS 190


>03_05_1147 - 30744180-30744350,30744439-30744924
          Length = 218

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -2

Query: 517 VCLRDEQRERIRPRKELVLFPPTLHD 440
           +CLR  QRE IR  K+ VLFP T  D
Sbjct: 169 LCLR--QREEIRTLKDAVLFPDTQPD 192


>03_02_0036 + 5182345-5183511
          Length = 388

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +1

Query: 208 AAVLVVSGGSSANGEARLQAGVARAASIPIALLYNKLIVSLRTHRTATKGVRE 366
           AAVL+ S  ++A     + A +A AASIP+  +   +   L+ ++ A +G +E
Sbjct: 241 AAVLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWIDSLLKGYQDALRGQKE 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,923,762
Number of Sequences: 37544
Number of extensions: 426625
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)