Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021849
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       31   1.1  
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)                      29   4.3  
SB_28049| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-18)                 29   5.7  
SB_25793| Best HMM Match : TP901-1_ORF40 (HMM E-Value=8.3)             29   5.7  

>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2   LANNFLSPSLNIKRLT-NFLLLSKTYLIFRVCLIPSLRQQNVRV*IKII 145
           L+ N+L+ S N   L+ N+L LSK YL   + L+ +L +  + + IK++
Sbjct: 130 LSKNYLTLSKNYSTLSKNYLTLSKNYLTLSIKLLNTLSKNYLTLSIKLL 178


>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
          Length = 622

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 318 YCIASHSQNSNKGCSRRF 371
           YC + H  N NKGC R F
Sbjct: 574 YCKSKHHANHNKGCERHF 591


>SB_28049| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-18)
          Length = 346

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 583 LAYVITLQRVSLRVKRKISNMATRS*LPVLCWKAREKFLKRWTARVLC 726
           +A +ITL  V+L + R++      S LP    + RE+ +K   A VLC
Sbjct: 204 VALLITLLVVNLFILRRLRQARVASTLPATQRRNRERRVKNAVAMVLC 251


>SB_25793| Best HMM Match : TP901-1_ORF40 (HMM E-Value=8.3)
          Length = 247

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 421 RFLRKSRREAL-VGTVQAPSVA*YARAVHLS 510
           RF++  R++ L VG +Q P V  Y R +H S
Sbjct: 192 RFVKSCRKDGLLVGIIQTPEVMSYGRVLHSS 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,378,779
Number of Sequences: 59808
Number of extensions: 505551
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)