Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021849
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12160.1 68414.m01408 flavin-containing monooxygenase family ...    33   0.17 
At1g71850.1 68414.m08303 expressed protein ; expression supporte...    30   2.0  
At1g12200.1 68414.m01412 flavin-containing monooxygenase family ...    30   2.0  
At3g58520.1 68416.m06523 expressed protein                             29   4.7  
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ...    28   6.2  
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    28   8.2  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    28   8.2  

>At1g12160.1 68414.m01408 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO2 from Homo sapiens
           [SP|Q99518]; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 468

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +1

Query: 181 YRTPVKYQTAAVLVVSGGSSANGEARLQAGVARAASIPIALLYNK---LIVSLRTHRTAT 351
           YR P  ++   V+V+   +S N  +   A +A+   I   ++ +       +LR H T  
Sbjct: 196 YRIPDPFKDEVVIVIGSQASGNDISTDIATIAKEVHISSKMVASDSYGCYDNLRIHPTIY 255

Query: 352 KGVREGSAVFRSTERIYSDVV 414
           +   +GS VFR+ + +++D +
Sbjct: 256 RAREDGSVVFRNGKVVFADAI 276


>At1g71850.1 68414.m08303 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 332 ALTEQQQRVFEKVRQYFGAQSESIPMSFVLGFYVSLVVKRWWEQYKLLPW 481
           ++ E++ R   K  +Y    + + PM F  GF V   +K+W + ++ LP+
Sbjct: 206 SVLEKKARTLRK-GEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPY 254


>At1g12200.1 68414.m01412 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to FMO2 from
           Homo sapiens [SP|Q99518]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 465

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +1

Query: 181 YRTPVKYQTAAVLVVSGGSSANGEARLQAGVARAASIPIALL----YNKLI--VSLRTHR 342
           YR P +++   V+V+   +S     R  A VA+   +         Y KL    +L  H 
Sbjct: 202 YRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEKLTGYENLWLHS 261

Query: 343 TATKGVREGSAVFRSTERIYSDVV 414
           T      +GS VF + + IY+D +
Sbjct: 262 TIQIAREDGSVVFENGKTIYADTI 285


>At3g58520.1 68416.m06523 expressed protein
          Length = 418

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 383 GAQSESIPMSFVLGFYVSLVVKRWWEQYKLLPW 481
           G  + + PMSF  G+     VK W ++++ LP+
Sbjct: 230 GQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPY 262


>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
           Mus musculus; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 457

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = +1

Query: 181 YRTPVKYQTAAVLVVSGGSSANGEARLQAGVARAASIPIAL----LYNKLIV---SLRTH 339
           YR P  ++   V+V+   +S    +R  A VA+   I         Y KL V   +L  H
Sbjct: 196 YRVPGPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPRNNLWIH 255

Query: 340 RTATKGVREGSAVFRSTERIYSDVV 414
                   +GS VF++ + +Y+D +
Sbjct: 256 SEIDTAYEDGSIVFKNGKVVYADSI 280


>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 781 FPGSVYLFVAHTNGIQYLDIGLLPSIFSKTFL 686
           F G+V++ + HT    ++ +    + FSK FL
Sbjct: 275 FEGNVHVNIRHTKDFHFVTVNTFSTTFSKVFL 306


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 290 MLAARATPACRRASPFAEDPPETTKTAAVW 201
           MLAA A+P  R ASP+ + P  T  +A+ W
Sbjct: 209 MLAA-ASPDARLASPWLDTPRSTMSSASPW 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,912,746
Number of Sequences: 28952
Number of extensions: 349412
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)