Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021848
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    32   0.10 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.74 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    28   1.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    26   6.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.1  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 263 LRRFLYARKHDVQQSFELLVRYHQYRRE 346
           L RFL ARK ++QQS E+ ++  ++R+E
Sbjct: 53  LLRFLRARKFNLQQSLEMFIKCEKWRKE 80


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 468 FEANTRSTQRPR-LSRCANTPGNPSASARNTPPSAEAHSSS 349
           F AN  S   P  +S   N P  PSA  R TPP+ +  SS+
Sbjct: 336 FTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSA 376


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 300 CTSCLRAYKNLLKKLCLDIGFCLV 229
           C  CLR +K  + + C+D+  CLV
Sbjct: 283 CIYCLREWKKPICRYCIDLRSCLV 306


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -3

Query: 456 TRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSSCSR 340
           TR++    ++  ++TP + S+S+ ++P S+ + SSS S+
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSK 177


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 263 LRRFLYARKHDVQQSFELLVRYHQYRREHD--ELWASADGGVLRALADGLPGVLAQRDRR 436
           L RFL ARK  V  S ++L     +R++ +   +    + G+ +         +  +D++
Sbjct: 55  LLRFLKARKFVVTDSSDMLANAIVWRQQANLRSIMVRGENGLNQNFVKASMYFIWGQDKK 114

Query: 437 GRCVLLVFASNWSP 478
           GR ++ +   N+ P
Sbjct: 115 GRAIVFLNLHNFIP 128


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 510 SLKTEINEHA*GDQFEANTRSTQRPRLSRCANTPGNPSA-SARNTPPSAEAHSS 352
           SLK++    + GD    + ++ +R  +  C N    P+   AR  PP  +  S+
Sbjct: 23  SLKSKFESLSTGDLTNLDEKTAKRRTVKGCKNGTSEPNVFKARPIPPPRQVSST 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,175
Number of Sequences: 5004
Number of extensions: 67424
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)