Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021848
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /...    31   1.1  
At1g05577.1 68414.m00577 hypothetical protein                          29   2.6  
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related...    29   4.5  
At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    29   4.5  
At3g18485.1 68416.m02349 hypothetical protein                          29   4.5  
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    28   5.9  
At4g17120.1 68417.m02578 expressed protein                             28   7.9  

>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
           and to SEC14 cytosolic factor (SP:P53989) [Candida
           glabrata]
          Length = 376

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 254 HNFLRRFLYARKHDVQQSFELLVRYHQYRREH 349
           HN LRRFL  R  D+++S E  + Y ++R ++
Sbjct: 48  HNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDY 79


>At1g05577.1 68414.m00577 hypothetical protein
          Length = 372

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 492 NEHA*GDQFEANTRSTQRPRLSRCANTPGNPSASAR 385
           N  A  D   +N  +T +PR  RC N PGNP    R
Sbjct: 331 NSSANNDLMTSN--NTVKPRQQRCRNIPGNPLGHQR 364


>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 244

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 468 FEANTRSTQRPRLSRCANTPGNPSAS-ARNTPPS 370
           F+ N     RPR+SR     GNP  S +RN PPS
Sbjct: 184 FDGNLIIPVRPRVSRYHFVAGNPLDSISRNIPPS 217


>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 501 SLDSASYH*THTGGYPEPSQRIRNYSG 581
           S+DS+SY     GGY  P QRI + SG
Sbjct: 198 SIDSSSYSKMSKGGYFTPMQRIDSASG 224


>At3g18485.1 68416.m02349 hypothetical protein
          Length = 386

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 446 HNARVYPVVPTHPATRRRALVTRPRLPKPTARHVP 342
           HN +VYP +P  P   RR    R  L      +VP
Sbjct: 138 HNGKVYPRIPAQPGPARRDAFMRDLLESHFLPNVP 172


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 471 QFEANTRSTQRPRLSRCANTPGNPSASARNTPPSAEAHSSS 349
           + E      Q+    R +  PG   AS RN PPSA   S +
Sbjct: 135 ELEQLEEQAQQEGFGRWSKVPGAAEASIRNLPPSAVGDSGN 175


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 529 RTLADIQNQANGYVIIVDWTEFTFKQSCSLQAKVLKMMIDCLQDCMPV 672
           RT   + N  +  + +VDW E  F +  SL   VL++++  +    PV
Sbjct: 594 RTCGSVSNMLSSELEVVDWNEIFFFRIDSLDDFVLELIVTDVGKGAPV 641


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,485
Number of Sequences: 28952
Number of extensions: 363959
Number of successful extensions: 1106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)