Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021847
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.94 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.8  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   8.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 268 ASGGEHRNGKLQGCARWCSWISNPRRWLSSHPALCDVYTNID 393
           A+ G+  NG    C R CS    P+   SS     DV TNID
Sbjct: 179 AAAGKASNGNKCCCLRTCSSAKRPKFENSSCDEDIDV-TNID 219


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 409 YCSLPHQCWYKHHIVQGERRAIF 341
           YCSLP+ C      + GE   +F
Sbjct: 482 YCSLPNSCALTTRELPGETLRLF 504


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 409 YCSLPHQCWYKHHIVQGERRAIF 341
           YCSLP+ C      + GE   +F
Sbjct: 489 YCSLPNSCALTTRELPGETLRLF 511


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 456 LELMHRQNWVTVLSSVVLDN 515
           L LMHR+  +T L    +DN
Sbjct: 284 LRLMHRRFEITALRLFTIDN 303


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 802 LGILTCSNPKNPLSF 758
           LG+L+CS PK  L +
Sbjct: 25  LGLLSCSFPKKKLVY 39


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 802 LGILTCSNPKNPLSF 758
           LG+L+CS PK  L +
Sbjct: 21  LGLLSCSFPKKKLVY 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,956
Number of Sequences: 336
Number of extensions: 5187
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)