Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021847
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 32 0.083
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 30 0.44
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.8
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 4.1
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.5
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 7.2
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 7.2
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 9.6
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 9.6
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 32.3 bits (70), Expect = 0.083
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 144 EEKVLKEGIHIDQVPSEYLSHKEKYELAIKKASLMFKYSENGKRRRTQ 287
EE++L++ + D+V ++ K K E KK ++ S NGK+R+T+
Sbjct: 186 EEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNGKKRKTE 233
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 159 KEGIHIDQVPSEYLSHKEKYELA---IKKASLMFKYSENGKRRRTQEW 293
+ G+ ++Q +YL+ KEK++ A + + + + + E RRR + W
Sbjct: 932 RTGVSVEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEETLRRRNEMW 979
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 629 LSCTPPGNATASTPSSFSYAT 691
+S PP +A+ STP+S SYA+
Sbjct: 226 ISAAPPDSASESTPASTSYAS 246
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 520 TYDPKTKEFVLHSPSLTAYKWWPGGLAHTAN 612
TY PK + LH SLT Y +P AH N
Sbjct: 261 TYSPKRQSTGLHRRSLTNYFKFPHRNAHQHN 291
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 777 PRIHYRSIHTKFRTDFADFYTWQRHMSLF 691
P + YR + +K +T DFY + + +S +
Sbjct: 162 PMVSYRKLKSKLKTTLLDFYDYLKLVSQY 190
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 609 QLLYRDGSAVHRREMPRHPRLHRSVTRRRDSYAFARYKSRRNR 737
QLL S +++++ P H R S + +RD+ YK+ N+
Sbjct: 495 QLLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNK 537
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 795 SSRVLIPRIHYR-SIHTKFRTDFADFYTWQRHMSLFVA 685
S R++I + SIH K +D+A+ WQ + FVA
Sbjct: 954 SRRLVISKFAQETSIHIKIFSDWAESQVWQDGLVCFVA 991
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 266 WQAEENTGMENYR-AVLGGALGSAILED-GSPLTLHYVMFIPTLMGQGTVEQQAYWIGR 436
W A+E E+ R +L G I D +PL L + +PT GT Q A W +
Sbjct: 488 WMAQEFNLSESDRFTMLSGIAHDPIQRDIFTPLFLGASLIVPTAEDIGTPGQLAQWANK 546
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 52 QLLYLHYTSIENHYFNV*A*LSTLNIF 132
Q+ YL +TS+E+ YF V S L ++
Sbjct: 125 QVAYLDFTSLESRYFQVHDSFSGLRLY 151
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.6
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 159 KEGIHIDQVPSEYLSHKEKYELAIKKASLMFKYSENGKRRRTQEWKITGLCSVVLLDQQS 338
K GI + Q E K+KYE IKK L + +E G + + VL ++
Sbjct: 246 KNGIRLSQDAQEEEKQKKKYEQHIKKL-LDGESNEEGGGEFQDHGMRSEINEEVLEEEDE 304
Query: 339 *KMALL 356
K+ALL
Sbjct: 305 EKIALL 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,662,351
Number of Sequences: 5004
Number of extensions: 81835
Number of successful extensions: 241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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