Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021847
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 116 2e-26
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 90 2e-18
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 77 2e-14
06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475... 32 0.62
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 30 1.9
04_03_0914 + 20788103-20789642,20790036-20790529 29 3.3
03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479 29 4.4
10_08_0211 + 15899017-15901392 29 5.8
02_03_0104 + 15251177-15251516,15251630-15251883,15252001-152521... 28 7.6
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 116 bits (279), Expect = 2e-26
Identities = 49/80 (61%), Positives = 61/80 (76%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
TTAT+DPKT EFV+HSP+LT+ KWWPGGL + + +V A+L T GK +GIH FIVQLR
Sbjct: 156 TTATFDPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIVQLRS 215
Query: 691 EETHMPLPGIKVGEIGAKLG 750
E H PLPG+ +G+IG K G
Sbjct: 216 LEDHSPLPGVTLGDIGGKFG 235
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/58 (51%), Positives = 38/58 (65%)
Frame = +2
Query: 362 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGLRQQQHTTPR 535
LH+ MF+P + GQGT EQQ W+ A+ IIG YAQTELGHG+ V+GL P+
Sbjct: 106 LHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDPK 163
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/83 (46%), Positives = 60/83 (72%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
T ATYD KT+EFV+++P +A K+W GG A+ A + IV AQL+ G+ G+HAF+ Q+RD
Sbjct: 210 TVATYDIKTREFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRD 269
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
E ++ +P I++ + G K+G+NG
Sbjct: 270 EHENV-MPNIQIADCGHKIGLNG 291
Score = 35.9 bits (79), Expect = 0.038
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 362 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGL 508
+H+ ++ + GT W+ N I G ++ TELGHG+ VRG+
Sbjct: 160 VHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGI 208
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 77.0 bits (181), Expect = 2e-14
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTA--GKCH-----GIHA 669
TTAT+DP T EF++++P+ A KWW G A + V A+L GK GIHA
Sbjct: 205 TTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFATVFARLILPLQGKGGDPADMGIHA 264
Query: 670 FIVQLRDEETHMPLPGIKVGEIGAKLGMNG 759
FIV +RD +T+ LPGI++ + G K+G+NG
Sbjct: 265 FIVPIRDLDTNAVLPGIEINDCGHKIGLNG 294
Score = 34.7 bits (76), Expect = 0.088
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +2
Query: 299 YRAVLGGALGSAILEDGSPLTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTE 478
Y AV+ A G A + G L + Y ++ +++ GT + + + N+D G +A TE
Sbjct: 135 YFAVMEAA-GGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTE 193
Query: 479 LGHGTFVRGLR 511
L HG+ V+ L+
Sbjct: 194 LHHGSNVQALQ 204
>06_02_0139 +
12247051-12247155,12247250-12247327,12247412-12247519,
12247882-12247944,12248024-12248185,12248424-12248624,
12248663-12248725,12248915-12249244,12249870-12250034,
12250110-12251078
Length = 747
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = -3
Query: 762 RSIHTKFRTDFADFYTWQRHMSLFVA*LNDEGVDAVAFPGGVQLSHHDTIVGRVSQS 592
R+I +F+++ + W+ M + V+ + + + + FPGG++ S VG+ +++
Sbjct: 475 RAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARA 531
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 634 LYTAGKCHGIHAFIVQLRDEETHM 705
L+T C GIH F VQ+R +E H+
Sbjct: 585 LHTVIMCEGIHPFEVQIRTKEMHL 608
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Frame = -2
Query: 463 SSNDVYIECSSYPICL---LFYCSL-------PHQCWYKHHIVQGERRAIF*DC*SKSTT 314
S DVY C Y IC+ L C+ H+ W G R DC + T
Sbjct: 292 SQCDVYAVCGPYTICIDNELPNCNCIKGFTITSHEDWELEDRTGGCSRNTPIDCTNNKNT 351
Query: 313 EHSPVIFHSCVLLRLPFSE 257
HS F+S ++LP +E
Sbjct: 352 THSSDKFYSMTCVKLPQNE 370
>03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479
Length = 180
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +1
Query: 310 ARWCSWI-SNPR----RWLSSHPALCDVYTNIDGARNSRTTSILD 429
ARW SWI NP + +++ CD + +DG NS +L+
Sbjct: 43 ARWISWIPDNPGCRYFKCVNARSGCCDYFAWVDGPSNSFVREVLN 87
>10_08_0211 + 15899017-15901392
Length = 791
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 177 DQVPSEYLSHKEKYELAIKKASLMFKYSEN 266
D +P YLS E +E +K+AS + K S+N
Sbjct: 584 DLLPDTYLSSAEVFESTVKEASDVLKGSDN 613
>02_03_0104 +
15251177-15251516,15251630-15251883,15252001-15252129,
15252578-15252985
Length = 376
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 266 WQAEENTGMENYRA-----VLGGALGSAILEDGSPLTLHYVMFIPTLMGQGTVE 412
+QAE+ + +N A +LG ALG+A+L + H VM++ GQG ++
Sbjct: 216 YQAEQQSDNQNIFAGFNPDLLGEALGNALLTPHWTVNAHIVMYVTA--GQGRIQ 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,486,308
Number of Sequences: 37544
Number of extensions: 533749
Number of successful extensions: 1335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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