Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021847
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14) 118 7e-27
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16) 79 6e-15
SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12) 30 1.9
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 5.9
SB_34996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_25437| Best HMM Match : F5_F8_type_C (HMM E-Value=1.9e-08) 29 5.9
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33) 28 7.7
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 7.7
SB_27728| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-08) 28 7.7
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
Length = 490
Score = 118 bits (283), Expect = 7e-27
Identities = 50/88 (56%), Positives = 65/88 (73%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
TTATYD +T++FVLHSPSLTA KWWPG L H+ NYCIV+A+L K +G+H F++Q RD
Sbjct: 187 TTATYDKQTQQFVLHSPSLTASKWWPGNLGHSTNYCIVVARLIIDDKEYGLHYFLLQTRD 246
Query: 691 EETHMPLPGIKVGEIGAKLGMNGTIMDS 774
+TH PLPG+ +GEIG K + D+
Sbjct: 247 LKTHQPLPGVTIGEIGPKTSRYYNVNDN 274
Score = 67.7 bits (158), Expect = 1e-11
Identities = 32/52 (61%), Positives = 37/52 (71%)
Frame = +2
Query: 353 PLTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGL 508
P LH VMF+PT+ GT EQQ W+ A I+GT+AQTELGHGTFVRGL
Sbjct: 134 PSDLHRVMFMPTIKLMGTKEQQEKWLPLAEMHQILGTFAQTELGHGTFVRGL 185
Score = 35.9 bits (79), Expect = 0.039
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 747 WYEWNDNGFLGLEHVRIPRE 806
+Y NDNGFL L+HVR+PRE
Sbjct: 268 YYNVNDNGFLLLDHVRVPRE 287
>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
TTA YD +TKEFV+++PS A K+W A A++ +V AQ Y G GIH +V +RD
Sbjct: 210 TTAVYDKETKEFVVNTPSPLAQKYWITNGACHAHHIVVFAQTYVDGVNQGIHGVLVPIRD 269
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
+ H+ PG+++ ++G K+G+NG
Sbjct: 270 HDLHVK-PGVRIDDMGHKMGLNG 291
>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
Length = 647
Score = 78.6 bits (185), Expect = 6e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
TTATYD +T+EF++++PS A K+W A A++ +V AQLY GK GIH +V +RD
Sbjct: 189 TTATYDNETQEFIVNTPSTLAQKYWITNGACDAHHIVVFAQLYVNGKNEGIHGVLVPIRD 248
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
+ +PG + ++G K+G+NG
Sbjct: 249 KNL-KEMPGSSIHDMGPKMGLNG 270
>SB_27283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +1
Query: 589 GGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRDEETHMPLPGIKVGEIGAK 744
G + HT ++ IV+AQLY K +GI F++Q+RD T P PG+K+G+IG K
Sbjct: 166 GHVGHTCSHAIVLAQLYIGKKSYGIQFFMLQIRDPVTRRPTPGVKLGDIGPK 217
Score = 52.0 bits (119), Expect = 6e-07
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +2
Query: 353 PLTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGH 487
P L+ +MFIPT+ GT QQ WI A + I+GTYAQTE+GH
Sbjct: 123 PTLLNDLMFIPTIKTLGTKRQQEKWIPLAKSYQILGTYAQTEMGH 167
>SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 615 LYRDGSAVHRREMPRHPRLHRSVTRRRD-SYAFARYKSRRNRCET 746
+ R GS V RR+ + S RRRD S A R SR RC+T
Sbjct: 65 MVRQGSRVRRRDTSKAMVRQGSQLRRRDTSKAMVRQGSRVRRCDT 109
>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
Length = 660
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 280 LLRLPFSEYLNINDAFLIASSYFSLWLKYSDG 185
LL+ E D F+I +YFSLW SDG
Sbjct: 171 LLQKHAMELYQARDNFIIKDAYFSLWCNRSDG 202
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 438 HSM*TSLELMHRQNWVTVLSSVVLDNSNIRPQD*RICTTQSIFNCI*MVARRIGSHGQLL 617
H S+ + +R N +T + +V+D S IRP R CT + + +A G + +
Sbjct: 164 HLCQVSVVIFYRVN-ITQGARIVVDRSEIRPDVPRKCT---VTGTVDQIANAKGLLDETI 219
Query: 618 YRDGSAVHRREMPR-HP 665
+A+ R+ MP HP
Sbjct: 220 AEHNAAMARKRMPAVHP 236
>SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 195 YLSHKEKYELAIKKASLMFKYSENGKRRRTQEWKI 299
Y H +YELA K+ +KY+ R+ T+E+K+
Sbjct: 603 YRQHVREYELASSKSQ--YKYTRRSYRQHTREYKL 635
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 787 CSNPKNPLSFHSYQVSHRFRRLLYLAKAYES 695
C PK+P + H +S RLLY AK+ S
Sbjct: 2405 CQKPKDPKALHPKNLSGVTERLLYCAKSDNS 2435
>SB_34996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 586 PGGLAHT--ANYCIVMAQLYTAGKCHGIHAF 672
PG +H ++C M L+ CHGIH+F
Sbjct: 151 PGTCSHNIAVSFCWCMPTLHECRYCHGIHSF 181
>SB_25437| Best HMM Match : F5_F8_type_C (HMM E-Value=1.9e-08)
Length = 103
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 256 TQKMASGGEHRNGKLQGCARWCSWISNPRRWLSSHPALCDVYT 384
+ K+ + NG+L G + WCS S P +L L VYT
Sbjct: 21 SSKIDNSHAANNGRLYGASSWCSLTSGPSEFLQVD--LGSVYT 61
>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
Length = 834
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 391 DGARNSRTTSILDRKSIQCRHHWNLCTDRTGSRYFRPWS-*TTATYDPKTKEFVLHSPS 564
DG + + +C H + + TD+ +R+ R TT DPK +E L P+
Sbjct: 628 DGGEDDGYRGYCPQLKYECGHTYGIATDKLTTRHMRNEKLITTRLPDPKEREQFLPQPN 686
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 505 TTDESTVTQFCLCISSNDVYIECSSYPICLLF-YCSLPHQCWY 380
TT + V ++C C Y C Y C + YC + C+Y
Sbjct: 460 TTTTAPVLRYCYCYCYCYYYCYCYCYYYCYYYCYCYCYYCCYY 502
>SB_27728| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-08)
Length = 150
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 256 TQKMASGGEHRNGKLQGCARWCSWISNPRRWLSSHPALCDVYT 384
+ K+ + NG+L G + WCS S P +L L VYT
Sbjct: 68 SSKINNSHAANNGRLYGASSWCSVTSGPSEFLQVD--LGSVYT 108
>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = -2
Query: 619 YNSWPCEPILLATIYMQLKMDCVVQIL*SWGRMLLLSKTTDESTVTQFCLCISSNDVYIE 440
Y SWP +LL +++ + + +L ++ L+ S +QF C+ V +
Sbjct: 38 YGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERPSAASQFNPCVGLEMVDHK 97
Query: 439 CSSY 428
+SY
Sbjct: 98 SASY 101
>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1209
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 256 TQKMASGGEHRNGKLQGCARWCSWISNPRRWLSSHPALCDVYT 384
+ K+ + NG+L G + WCS S P +L L VYT
Sbjct: 378 SSKINNSHAANNGRLYGASSWCSVTSGPSEFLQVD--LGSVYT 418
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,111,784
Number of Sequences: 59808
Number of extensions: 614156
Number of successful extensions: 1617
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -