Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021847
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac... 113 1e-25
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil... 113 1e-25
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac... 87 1e-17
At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong simil... 81 9e-16
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac... 76 3e-14
At1g53010.1 68414.m06001 zinc finger (C3HC4-type RING finger) fa... 32 0.52
At4g11060.1 68417.m01797 single-strand-binding family protein co... 30 2.1
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 29 4.8
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 29 4.8
At5g13340.1 68418.m01535 expressed protein 28 6.3
At3g23100.1 68416.m02912 double strand break repair protein, put... 28 8.4
>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
Length = 675
Score = 113 bits (273), Expect = 1e-25
Identities = 51/83 (61%), Positives = 62/83 (74%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
TTAT+DPKT EFV+H+P+ TA KWWPGGL + + +V A+L T GK +GIH FIVQLR
Sbjct: 151 TTATFDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRS 210
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
E H PLP I VG+IG K+G NG
Sbjct: 211 LEDHSPLPNITVGDIGTKMG-NG 232
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/58 (51%), Positives = 38/58 (65%)
Frame = +2
Query: 362 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGLRQQQHTTPR 535
LH+ MF+P + GQGT EQQ W+ A + IIG YAQTELGHG+ V+GL P+
Sbjct: 101 LHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPK 158
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 750 YEWNDNGFLGLEHVRIPRE 806
Y DNGFL +HVRIPR+
Sbjct: 234 YNSMDNGFLMFDHVRIPRD 252
>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase [Arabidopsis thaliana]
GI:3044214
Length = 664
Score = 113 bits (273), Expect = 1e-25
Identities = 48/83 (57%), Positives = 62/83 (74%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
TTAT+DPKT +F++HSP+ T+ KWWPGGL + + ++ A+L T GK HG+H FIVQLR
Sbjct: 151 TTATFDPKTDQFIIHSPTQTSSKWWPGGLGKVSTHAVIYARLITNGKDHGVHGFIVQLRS 210
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
+ H PLPGI VG+IG K G NG
Sbjct: 211 LDDHSPLPGITVGDIGMKFG-NG 232
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +2
Query: 356 LTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGLRQQQHTTPR 535
L LH+ MF+P + GQGT +QQ W+ A + IIG YAQTELGHG+ V+GL P+
Sbjct: 99 LDLHWGMFVPAIKGQGTEQQQQKWLSLATKMQIIGCYAQTELGHGSNVQGLETTATFDPK 158
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 750 YEWNDNGFLGLEHVRIPRE 806
Y DNGFL +H RIPR+
Sbjct: 234 YNSMDNGFLMFDHFRIPRD 252
>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
GI:8515709
Length = 675
Score = 87.4 bits (207), Expect = 1e-17
Identities = 38/83 (45%), Positives = 58/83 (69%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
T TYDPKT+EFV+++P +A K+W GG A+ A + IV +QL+ G G+HAFI Q+RD
Sbjct: 202 TVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGTNQGVHAFIAQIRD 261
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
++ + P I++ + G K+G+NG
Sbjct: 262 QDGSI-CPNIRIADCGHKIGLNG 283
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 362 LHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQTELGHGTFVRGL 508
+H+ ++ + GT W+ + + G +A TELGHG+ VRG+
Sbjct: 152 VHFFLWGNAVKFFGTKRHHEKWLKNTEDYVVKGCFAMTELGHGSNVRGI 200
>At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase ACX3 GI:8163758 from
[Arabidopsis thaliana]
Length = 675
Score = 81.0 bits (191), Expect = 9e-16
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLYTAGKCHGIHAFIVQLRD 690
T TYDP T+EFV+++P +A K+W G A+ AN+ IV++QL G GIH FI Q+RD
Sbjct: 202 TVTTYDPTTEEFVINTPCESAQKYWIGEAANHANHAIVISQLSMNGTNQGIHVFIAQIRD 261
Query: 691 EETHMPLPGIKVGEIGAKLGMNG 759
+ + P +++ + G K+G+NG
Sbjct: 262 HDGN-TCPNVRIADCGHKIGLNG 283
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +2
Query: 254 ILRKWQAEENTGMENYRAVLGGALGSAILEDGSPLTLHYVMFIPTLMGQGTVEQQAYWIG 433
+ + W E E + L G + L +H++++ + GT W+
Sbjct: 116 VFQGWLTETGPEAELKKFALYEVCGIYDYSLSAKLGVHFLLWGNAVKFFGTKRHHEKWLK 175
Query: 434 RAFNVDIIGTYAQTELGHGTFVRGL 508
+ + G +A TELGHGT VRG+
Sbjct: 176 DTEDYVVKGCFAMTELGHGTNVRGI 200
>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
Length = 692
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = +1
Query: 511 TTATYDPKTKEFVLHSPSLTAYKWWPGGLAHTANYCIVMAQLY-----TAGKCH-GIHAF 672
TTAT+DP EFV+ +P+ A KWW G A + V A+L + G G+HAF
Sbjct: 199 TTATFDPLKDEFVIDTPNDGAIKWWIGNAAVHGKFATVFARLILPTHDSKGVSDMGVHAF 258
Query: 673 IVQLRDEETHMPLPGIKVGEIGAKLGMNG 759
IV +RD +TH LPG+++ + G K+G+NG
Sbjct: 259 IVPIRDMKTHQTLPGVEIQDCGHKVGLNG 287
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +2
Query: 293 ENYRAVLGGALGSAILEDGSPLTLHYVMFIPTLMGQGTVEQQAYWIGRAFNVDIIGTYAQ 472
E Y A++ A+GS + G + + Y ++ +++ GT + + + N+D G +A
Sbjct: 127 EKYFAIME-AVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYTGCFAM 185
Query: 473 TELGHGTFVRGLR 511
TEL HG+ V+GL+
Sbjct: 186 TELHHGSNVQGLQ 198
>At1g53010.1 68414.m06001 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 178
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 499 DESTVTQFC-LCISSNDVYIECSSYPICLLFYCSLPHQCWYKHHI 368
++S ++ C +C+S V EC +P+C Y +L W K+H+
Sbjct: 122 EKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHL 166
>At4g11060.1 68417.m01797 single-strand-binding family protein
contains Pfam domain PF00436: Single-strand binding
protein family
Length = 201
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +2
Query: 299 YRAVLGGALGSA----ILEDGSPLTLHYV----MFIPTLMGQGTVEQQAYWIGRAFNVDI 454
+RA++ G +G A IL +G +T+ V MF L+G + A W A + ++
Sbjct: 72 HRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQWHRIAVHNEV 131
Query: 455 IGTYAQTELGHGTFV 499
+G+YA +L + V
Sbjct: 132 LGSYAVQKLAKNSSV 146
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 361 GERRAIF*DC*SKSTTEHSPVIFHSCV 281
G +F DC + ST H P I SCV
Sbjct: 704 GSVNFVFGDCTNPSTVSHEPAIIFSCV 730
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 361 GERRAIF*DC*SKSTTEHSPVIFHSCV 281
G +F DC + ST H P I SCV
Sbjct: 685 GSVNFVFGDCTNPSTVSHEPAIIFSCV 711
>At5g13340.1 68418.m01535 expressed protein
Length = 242
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 621 RDGSAVHRREMPRHPRLHRSVTRRRDSYAFARYKSRRNR 737
R S HRR R P HRS R R + + Y SR +
Sbjct: 7 RSRSPSHRRRYSRSPVTHRSSRRTRRDRSRSPYTSRHKK 45
>At3g23100.1 68416.m02912 double strand break repair protein,
putative (XRCC4) identical to cDNA putative double
strand break repair protein (XRCC4) GI:9800642
Length = 264
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 120 SQYIFYLIEEKVLKEGIHIDQVPSEYLSHKEKYELAIKKASLMFKYSENGKRRRTQEW 293
S +I EE+V + DQ SEYL E+Y L ++ + ++ +S+ + + W
Sbjct: 58 SSWICNATEEEVAERAAQWDQPVSEYLKLAEQY-LGFQQPNSVYSFSDALEGSKRLSW 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,351
Number of Sequences: 28952
Number of extensions: 424167
Number of successful extensions: 1105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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