Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021846
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0629 - 5183504-5184970 31 1.1
12_02_0343 - 17748882-17753396 30 1.9
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 30 2.5
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 29 3.3
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 4.3
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 5.7
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 28 7.6
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 28 7.6
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 28 7.6
02_05_0554 + 29929860-29929959,29932944-29934220 28 7.6
03_04_0055 + 16891212-16891848,16893166-16893206 28 10.0
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 28 10.0
>12_01_0629 - 5183504-5184970
Length = 488
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 492 QVDLGRFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKAY 635
+VD+G+ +Y GM+D L +L D + I A+LA P +
Sbjct: 166 EVDIGQVLYHGMFDLLANVLLSVDAHPNLRDLMEDIVAILAKPNASDF 213
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -1
Query: 330 LHVLVDLEGL--LVIGPGESVLA--TEVPEMAVLWAYCLPSISSTGI*PNGV 187
LH+L +E L +S+ A +++P + LW C P+ISS G PN +
Sbjct: 1372 LHILTSIEDLEFYCCEKLQSLPAELSQIPTIKTLWISCCPAISSLGNLPNSL 1423
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +2
Query: 62 VKFYYFPVKALGESQRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDGK 229
+K Y P+ + L G+++E D I+ PE + PFGQ+P L+
Sbjct: 3 MKVYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQDGDL 62
Query: 230 QYAQSTAIS 256
+S AIS
Sbjct: 63 ILFESRAIS 71
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 188 TPFGQMPVLEIDGKQYAQSTAISGTSVASTDS 283
TP+G++ V E +GK AI +SVA D+
Sbjct: 444 TPWGELEVYEYNGKYTEHRAAIDSSSVADDDT 475
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 143 DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAIS 256
D R ++ P F PFGQ+PVL+ + +S AI+
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAIN 76
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 444 ETQ*DTDEEQRSYRAWQVDLGRFVYAGMYDYLKAMLQKPDLEQK 575
E + D D+E SY +W VD Y +++A+ QK E++
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYR---QHVEALAQKQLFEEQ 1612
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 35 LHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVL 214
L +PT+ VK + ++R+L Y G + E W K T + +P+
Sbjct: 171 LQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPIT 230
Query: 215 EID 223
++D
Sbjct: 231 DLD 233
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +2
Query: 35 LHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVL 214
L +PT+ VK + ++R+L Y G + E W K T + +P+
Sbjct: 166 LQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPIT 225
Query: 215 EID 223
++D
Sbjct: 226 DLD 228
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 196 RSDAGAGDR-RQAVRPEHRHLRYLGR 270
R DA GDR RQA++ HRH R++ R
Sbjct: 188 RQDAHGGDRGRQALQGGHRHGRFMMR 213
>02_05_0554 + 29929860-29929959,29932944-29934220
Length = 458
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 279 SVLATEVPEMAVLWAYCLPSISSTGI*PNGVLGLNSGQFS 160
S+L P + + YCLPS SS+G G N GQ+S
Sbjct: 260 SLLYQLAPSLGYSFTYCLPSSSSSGYLSLG--SYNPGQYS 297
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 215 EIDGKQYAQSTAISGTSVASTDSP 286
EI+G++ A ST +GTS AST P
Sbjct: 113 EIEGERAAASTTGAGTSAASTTPP 136
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 348 ANVVQELHVLVDLEGLLVIGPGESVL 271
AN + E+H+ + LE LL +GP ++ L
Sbjct: 550 ANGINEMHLQIRLEKLLTLGPDDNQL 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,206,698
Number of Sequences: 37544
Number of extensions: 326491
Number of successful extensions: 987
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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