Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021846
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 66   4e-11
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 64   1e-10
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 58   6e-09
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 51   1e-06
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   33   0.36 
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
 Frame = +2

Query: 53  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDG 226
           MP+ K YYF  +   E  RL+ A  G EFEDNR++   WP+ K +   PFGQ+P+L ID 
Sbjct: 1   MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDD 60

Query: 227 K-QYAQSTAI 253
           K + AQS AI
Sbjct: 61  KIKLAQSLAI 70


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = +2

Query: 53  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDG 226
           MPN K  YF  +   E  RL  A GG  +ED R++ E W + K   KT  G +PVLE+DG
Sbjct: 1   MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDG 60

Query: 227 KQYAQSTAI 253
            QY +S AI
Sbjct: 61  IQYCESMAI 69


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 37/81 (45%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
 Frame = +2

Query: 23  NYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TP 193
           N SLL   P MP+ K +YF  +   E  RL  A  G E+ED R    E W   KP+   P
Sbjct: 14  NISLLPF-PKMPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPP 72

Query: 194 FGQMPVLEIDGK-QYAQSTAI 253
           FGQ+P+L ID K + AQS AI
Sbjct: 73  FGQVPLLVIDDKIKLAQSMAI 93


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +2

Query: 56  PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 226
           P  +  YF  +A  E  R+LL      F D R++  +W   K   + PFG++P+LEI DG
Sbjct: 3   PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62

Query: 227 KQYAQSTAI 253
           ++ AQS AI
Sbjct: 63  RKLAQSHAI 71


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +2

Query: 98  ESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAISGTSVAST 277
           E QRL+L    +E + NR ++  W E  P  P     +LEI  +Q  Q  A +     S 
Sbjct: 768 ERQRLILEQQERE-QQNRAAAAGWGEHAPVGPPPVKSLLEIQEEQARQQKAKAQNQQLSR 826

Query: 278 DSPGP 292
             P P
Sbjct: 827 SQPAP 831


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 74  YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 181
           YF V+A GE  R+LL      F + R   E+WP  K
Sbjct: 95  YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVK 130


>SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 214 GDRRQA-VRPEHRHLRYLGRKYGLAGANDEEAFEID 318
           GD++   +   +  LRY+GRKY + G  +EE   +D
Sbjct: 10  GDKKHIKITQSNAILRYIGRKYDMCGKTEEEKVIVD 45


>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 62  VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 187
           V  +YF  +   E  RL++   G  + +   + E+WP  K K
Sbjct: 54  VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,833,810
Number of Sequences: 59808
Number of extensions: 356885
Number of successful extensions: 929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)