Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021846
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75270.1 68414.m08744 dehydroascorbate reductase, putative si...    30   1.6  
At5g17220.1 68418.m02018 glutathione S-transferase, putative           29   3.6  
At2g06120.1 68415.m00672 hypothetical protein contains Pfam prof...    29   3.6  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    28   6.3  
At1g51560.1 68414.m05803 expressed protein                             28   8.3  

>At1g75270.1 68414.m08744 dehydroascorbate reductase, putative
           similar to GI:6939839 from [Oryza sativa]
          Length = 213

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = +2

Query: 101 SQRLLLAYGGQE--FEDNRISSENWPE-FKPKTPFGQMPVLEIDGKQYAQSTAISG 259
           SQR+LL    ++  ++ + I+  + P+ F   +P G++PV+++DGK  A S  I G
Sbjct: 23  SQRVLLTLEEKKLPYKTHLINVSDKPQWFLDISPEGKVPVVKLDGKWVADSDVIVG 78


>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = +2

Query: 104 QRLLLAY--GGQEFEDNRISSENWPEFKP----KTPFGQMPVLEIDGKQYAQSTAIS 256
           QR+LL +   G EFE   I  + + + KP    + PFGQ+P +E    +  +S AI+
Sbjct: 15  QRVLLCFLEKGIEFEIIHIDLDTFEQKKPEHLLRQPFGQVPAIEDGDFKLFESRAIA 71


>At2g06120.1 68415.m00672 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 473

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 501 LGRFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAI 617
           LG   + G     +A +Q PD+E+K  + +KP EA L +
Sbjct: 53  LGSTTFVGKSFGPRATIQYPDVEEKLMSMKKPSEARLRV 91


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 44  NPTMPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEID 223
           +PT+  V+      +   +++R+L  Y G        + E W   K  T +  +P+ E+D
Sbjct: 173 DPTVDEVRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELD 232


>At1g51560.1 68414.m05803 expressed protein
          Length = 392

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 21  TIIHYCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNL 185
           T ++ C I +   T  +  +P+ P A +   CWL  +++ + I   ++ G N  L
Sbjct: 7   TSVYVCNIPK---TKKAFFNPN-PPALSSSSCWLCNSQAKQIIKLRIREGSNQGL 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,406,621
Number of Sequences: 28952
Number of extensions: 252884
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)