Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021845
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    36   0.007

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +3

Query: 186 DLNDQITKQGDLVRSLKAAKAEKQKLTK 269
           D+N++IT QG+LVRSLK+  A K+ + K
Sbjct: 7   DINERITSQGNLVRSLKSQGASKEDIDK 34



 Score = 32.3 bits (70), Expect = 0.068
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +2

Query: 392 LDQQITKQGDLVRSLKTSKAEKSKID 469
           ++++IT QG+LVRSLK+  A K  ID
Sbjct: 8   INERITSQGNLVRSLKSQGASKEDID 33



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 592 LDRDVTAQGDLVRSLKASKADKAKIDEAV 678
           ++  +T+QG+LVRSLK+  A K  ID+ V
Sbjct: 8   INERITSQGNLVRSLKSQGASKEDIDKEV 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,943
Number of Sequences: 5004
Number of extensions: 33324
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)