Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021845
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0369 - 2743412-2743502,2744007-2744174,2744265-2744380,274...    31   0.87 
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618...    30   1.5  
09_02_0292 + 6991202-6991937,6998629-6999185,6999489-7000196           30   1.5  
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    30   2.0  
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    30   2.0  
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919...    28   8.1  

>07_01_0369 -
           2743412-2743502,2744007-2744174,2744265-2744380,
           2744981-2745136
          Length = 176

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 128 SSERSSEQAGGRGADSSLVRFERPDHKTGRSGEISQSC*SRKA--KVDEAVKVLLELKAK 301
           S+  S  Q G     S +VRF+RP      +G  ++   S K    VDE ++ L E  AK
Sbjct: 27  SANASQSQVGSPLDSSQIVRFDRPRSGKYTNGSTTELASSMKVVKNVDETIRQLHEEVAK 86

Query: 302 YKTAT 316
            + A+
Sbjct: 87  MEAAS 91


>11_06_0390 -
           23060034-23060399,23060486-23060573,23061767-23061843,
           23062971-23063057
          Length = 205

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 132 QSVQASKPVAAALTPASSDLNDQITKQGDLVRSLKAAKAEKQKLTKLSKC 281
           Q    +   AAA+ PA+    +QI K  D  + L  A  E Q L KL++C
Sbjct: 4   QMAMPAGAAAAAVPPAAGITTEQIQKYLDENKQLILAILENQNLGKLAEC 53


>09_02_0292 + 6991202-6991937,6998629-6999185,6999489-7000196
          Length = 666

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 120 PKPAQSVQASKPVAAALTPASSDLNDQITKQGDLVRSLKAAKA 248
           P P   +Q  +P AAA + A++ L + +T +GD    + AA A
Sbjct: 28  PPPQVVLQVDRPAAAAPSAAANTLLEGVTSEGDSALHVVAAAA 70


>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 182 RGWSQRRGHRLARLNALSWFRR 117
           +GW+++  H+  RLN  SW+ R
Sbjct: 261 KGWTEKGAHKYGRLNEQSWWER 282


>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +3

Query: 174 PASSDLNDQ---ITKQGDLVRSLKAAKAEKQKLT 266
           P+ SD+      + ++GD V  LKAAKA KQ++T
Sbjct: 220 PSESDIEAARVVVKEKGDAVAQLKAAKASKQEIT 253



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 577 NDVTALDRDVTAQGDLVRSLKASKADKAKIDEAV 678
           +D+ A    V  +GD V  LKA+KA K +I  AV
Sbjct: 223 SDIEAARVVVKEKGDAVAQLKAAKASKQEITAAV 256


>09_04_0588 -
           18789971-18790000,18790334-18790507,18791470-18791954,
           18792912-18793266
          Length = 347

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 116 YAETSSERSSEQAGGRGADSSLVRFERPDHKTGR 217
           Y     ++  E  GG G D  +V F  P+H+  R
Sbjct: 27  YCSGQHQQRGEDGGG-GGDGEMVHFSHPEHRLAR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,344,389
Number of Sequences: 37544
Number of extensions: 227091
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)