Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021845
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 33 0.22
SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041) 32 0.51
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_55571| Best HMM Match : PAS (HMM E-Value=6.8e-15) 29 3.6
SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4) 28 8.3
SB_12438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/71 (35%), Positives = 34/71 (47%)
Frame = +2
Query: 257 KVDEAVKVLLELKAKYKTATGQDWKPGTXXXXXXXXXXXXXXXXXLDQQITKQGDLVRSL 436
K+D AV L+ K K A + T L ++T+QG+ VRSL
Sbjct: 442 KIDPAVCEKLKAKYAGKKAPSKAKPSATPSSTPAPGAASPATIEALQAEVTQQGEKVRSL 501
Query: 437 KTSKAEKSKID 469
KT+KAEK+ ID
Sbjct: 502 KTNKAEKAVID 512
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +1
Query: 583 VTALDRDVTAQGDLVRSLKASKADKAKIDEAV 678
+ AL +VT QG+ VRSLK +KA+KA ID V
Sbjct: 484 IEALQAEVTQQGEKVRSLKTNKAEKAVIDAEV 515
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 KPAQSVQASKPVAAALTPASSD-LNDQITKQGDLVRSLKAAKAEK 254
KP+ + +S P A +PA+ + L ++T+QG+ VRSLK KAEK
Sbjct: 465 KPS-ATPSSTPAPGAASPATIEALQAEVTQQGEKVRSLKTNKAEK 508
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 119 AETSSERSSEQAGGRGADSSLVRFERPDHKTGRSGEISQSC*SRKAKVDEAVKVLLELKA 298
A+ S+ SS A G + +++ + + G ++ + KA +D V LLELK
Sbjct: 464 AKPSATPSSTPAPGAASPATIEALQAEVTQQGEKVRSLKTNKAEKAVIDAEVTRLLELKK 523
Query: 299 KYKTATGQD 325
K A G+D
Sbjct: 524 KLSLAEGKD 532
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +2
Query: 251 KAKVDEAVKVLLELKAKYKTATGQD 325
K VD V VLL+LKA YKT TG D
Sbjct: 452 KGTVDAEVAVLLKLKADYKTMTGTD 476
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 401 QITKQGDLVRSLKTSKAEKSKID 469
+IT+QGD VR+LKT A+K +D
Sbjct: 434 EITQQGDKVRTLKTGGADKGTVD 456
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 583 VTALDRDVTAQGDLVRSLKASKADKAKIDEAV 678
V L ++T QGD VR+LK ADK +D V
Sbjct: 428 VEKLMGEITQQGDKVRTLKTGGADKGTVDAEV 459
>SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041)
Length = 83
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 159 AAALTPASSDLNDQITKQGDLVRSLKAAKAEK 254
A AL+ A+ +L IT+QGD VRSLK A K
Sbjct: 52 APALSEAAQELLATITQQGDKVRSLKTQGAHK 83
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Frame = +2
Query: 260 VDEAVKVLLELKAKYKTATGQDWKPGTXXXXXXXXXXXXXXXXXLDQQ------------ 403
VD AV LL+LKA+YK TG++ G +
Sbjct: 3 VDAAVATLLKLKAQYKDLTGEEVAGGKPKKEKKKDTKQEAKQPGKQAESAPALSEAAQEL 62
Query: 404 ---ITKQGDLVRSLKTSKAEK 457
IT+QGD VRSLKT A K
Sbjct: 63 LATITQQGDKVRSLKTQGAHK 83
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 123 KPAQSVQASKPVAAALTPASSDLNDQITKQGDLVRSLKAAK 245
+PA SV S PV A A ++ +++ +L+R LKA +
Sbjct: 740 RPADSVSPSVPVEVATPKAGGSASNMSSRREELLRELKAVE 780
>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 592 LDRDVTAQGDLVRSLKASKADKAKIDEAVK 681
L + V QGDLVR LK KA + ++ A+K
Sbjct: 13 LRKSVKEQGDLVRKLKEDKAPENDVEIAIK 42
>SB_55571| Best HMM Match : PAS (HMM E-Value=6.8e-15)
Length = 379
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 307 NGHGTRLEARYRSTSTSTFRISLR*RSV 390
NGH R+E R+R STF ++L +SV
Sbjct: 29 NGHHARIETRFRRKDGSTFPVALFVQSV 56
>SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4)
Length = 145
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 450 PKNRKLTRLSRHCWNSKPNTGCHRTRLEARIRAC 551
P N + TR R C + TGCHRTR + C
Sbjct: 60 PLNSQTTRGER-CRTRQGVTGCHRTRARQGMTGC 92
>SB_12438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 42 CVVLKICLTSVYFVVNCKPSE*LLITPKPAQSVQASKPVAAA 167
CV K C V +NC PS+ LI + KPV A
Sbjct: 8 CVPSKTCTAMVISYLNCVPSKIKLIDTVDLEGGPVGKPVVPA 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,763,204
Number of Sequences: 59808
Number of extensions: 257041
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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