Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021845
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    38   0.005
U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...    29   4.2  
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...    29   4.2  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    28   7.3  
AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical protein
            ZC434.5 protein.
          Length = 1149

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +2

Query: 245  SRKAKVDEAVKVLLELKAKYKTATGQDWKPG----TXXXXXXXXXXXXXXXXXLDQQITK 412
            S+  +  +A+  LLELK  YK  TG D+KPG                      L +QI  
Sbjct: 964  SKSQETKDAIAKLLELKKNYKEVTGSDYKPGPAPAAAPAKVTVPAPSVSGGDTLSKQIDD 1023

Query: 413  QGDLVRSLKTSKAEKSK 463
            Q  LVR LK   A+  +
Sbjct: 1024 QALLVRELKMKDAKSQE 1040



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 266  EAVKVLLELKAKYKTATGQDWKPGTXXXXXXXXXXXXXXXXXLDQQITKQGDLVRSLKT- 442
            +A+  LL LK +YK  TG D KPG                  +  QI  QG LVR LK  
Sbjct: 904  DAIAKLLALKKQYKEVTGSDHKPGV-VPVSAPAPTPLAGGADIAGQIEAQGVLVRDLKNK 962

Query: 443  -SKAEKSK 463
             SK++++K
Sbjct: 963  DSKSQETK 970



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 245  SRKAKVDEAVKVLLELKAKYKTATGQDWKPG----TXXXXXXXXXXXXXXXXXLDQQITK 412
            ++  +  +A+  LL+LK +YK ATG D+KP                       L ++I +
Sbjct: 1036 AKSQETKDAIAKLLQLKKQYKDATGSDYKPAPAQLAASAAAAPAPAPAFDEAALLKEIEE 1095

Query: 413  QGDLVRSLKTSKAEKSK 463
            QG +VR  K SK  KS+
Sbjct: 1096 QGAVVRDAK-SKDPKSQ 1111



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 266 EAVKVLLELKAKYKTATGQDWKPG 337
           +A+  LL+LK KYK  TG D KPG
Sbjct: 759 DAIAKLLDLKKKYKELTGSDHKPG 782



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +2

Query: 266  EAVKVLLELKAKYKTATGQDWKPG----TXXXXXXXXXXXXXXXXXLD--QQITKQGDLV 427
            +A+  LLELK +YK  +G D KPG                      LD   QI  QG LV
Sbjct: 830  DAIAKLLELKKQYKEVSGSDHKPGVPPAASVASAPAPAPAAGSTNALDIYHQIESQGALV 889

Query: 428  RSLKTSKAE 454
            R LK   A+
Sbjct: 890  RELKGKDAK 898


>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 604 VTAQGDLVRSLKASKADKAKIDEAV 678
           V   GDL+R LKA  A K  ID+AV
Sbjct: 17  VKEYGDLIRDLKAKGAPKIDIDKAV 41


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 604 VTAQGDLVRSLKASKADKAKIDEAV 678
           V   GDL+R LKA  A K  ID+AV
Sbjct: 81  VKEYGDLIRDLKAKGAPKIDIDKAV 105


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
           protein C34D4.14 protein.
          Length = 2761

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 117 TPKPAQSVQASKPVAAALTPASSDLNDQITKQGDLVRSLKAAKAEKQKLTK 269
           TP  +     SKP A A + ASS +   ++K   +    K+A A  +K TK
Sbjct: 736 TPSSSTQQSISKPKATASSTASSAILQVVSKLSSVASLDKSAAAVDKKPTK 786


>AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical
           protein ZK250.6 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -3

Query: 115 INNYSLGLQFTTKYTEV---KHIFNTTHT 38
           INN+S+G+++T K   V   + ++NT HT
Sbjct: 459 INNWSIGVKYTLKLMSVDGQRLLYNTKHT 487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,717
Number of Sequences: 27780
Number of extensions: 192176
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)