Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021845
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    33   0.24 
At1g42430.1 68414.m04893 expressed protein                             29   3.9  
At1g48380.1 68414.m05404 root hair initiation protein root hairl...    28   5.1  
At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identica...    28   6.8  

>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +1

Query: 604 VTAQGDLVRSLKASKADKAKIDEAVK 681
           V AQG+ VR+LKAS+A K +ID A++
Sbjct: 58  VEAQGNAVRALKASRAAKPEIDAAIE 83


>At1g42430.1 68414.m04893 expressed protein
          Length = 435

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 182 RGWSQRRGHRLARLNALSWFRR 117
           +GW+++  H+  RLN  SW+ +
Sbjct: 261 KGWTEKGAHKYGRLNEQSWWEK 282


>At1g48380.1 68414.m05404 root hair initiation protein root hairless
           1 (RHL1)
          Length = 355

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/73 (34%), Positives = 34/73 (46%)
 Frame = +2

Query: 113 DYAETSSERSSEQAGGRGADSSLVRFERPDHKTGRSGEISQSC*SRKAKVDEAVKVLLEL 292
           ++AETSSE SS ++ G  +D        P+  T RS E SQ           A K+  EL
Sbjct: 258 NFAETSSEASSGESEGNTSDEDEKPLLEPESST-RSREESQ---DGNGITASASKLPEEL 313

Query: 293 KAKYKTATGQDWK 331
            AK +    +D K
Sbjct: 314 PAKREKLKSKDSK 326


>At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identical
           to gi:3883120 gb:AAC77823
          Length = 131

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 96  PSE*LLITPKPAQSVQASKPVAAALTPASS 185
           PS   +  P PA  V  S   AAALTP SS
Sbjct: 41  PSPKKMTAPAPAPEVSPSPSPAAALTPESS 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,234
Number of Sequences: 28952
Number of extensions: 178623
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)