Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021844
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    61   1e-10
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    44   2e-05
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    44   3e-05
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    44   3e-05
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    30   0.29 
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.8  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
 Frame = +2

Query: 17  KGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALD-ANNSARGSLY 193
           KG ++  P  + ++PV  RGG I+  RER+RR++ L  +DPFTL +A+     +A G LY
Sbjct: 770 KGHQVV-PAPLGRVPVLLRGGNILITRERIRRAAELTRNDPFTLTIAVSKIGKNASGFLY 828

Query: 194 IDDGETY 214
           +DDG T+
Sbjct: 829 LDDGVTF 835


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 36/59 (61%)
 Frame = +2

Query: 29   ITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDG 205
            IT    ++ I V  RGG I+P  ++   ++     +P+ L+VALD++  A GSLY+DDG
Sbjct: 844  ITLSAPLTHINVAIRGGNIIPM-QKPSLTTHETKQNPYDLLVALDSDRKACGSLYVDDG 901


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 36/59 (61%)
 Frame = +2

Query: 29   ITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDG 205
            IT    +  + +  RGG I+P ++    ++    ++P++L++A+D N  A GSLYIDDG
Sbjct: 847  ITMSAPLGYVNIAVRGGNIIPLQQP-GYTTYESRNNPYSLLIAMDNNGFASGSLYIDDG 904


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = +2

Query: 29   ITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDGE 208
            +T    +  I V  RGG+++P ++    ++     +PF L+VALD + SA G LY+DDG 
Sbjct: 822  VTLYAPLEHINVAIRGGSVLPMQQP-SLTTYESRQNPFNLLVALDRDGSATGELYLDDGV 880

Query: 209  TYE 217
            + E
Sbjct: 881  SIE 883


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 168 LASSATTRVKGSSAISAEE-RRTRSRRGTMVPPR--WYTGILEMVTGCVMRGPL 16
           +A+   T+ + +S ++++   R  S   T+  P+  WY   L  +TGCV+ G L
Sbjct: 37  IATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAGTL 90


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 56  IPVYQRGGTIVPRRERVRRSSALMADDPFT 145
           IP   +  ++VP +     SS+LM D P T
Sbjct: 663 IPPVTQASSLVPSKNNTASSSSLMLDSPVT 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,697
Number of Sequences: 5004
Number of extensions: 41370
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)