Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021844
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 77 1e-14
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 45 7e-05
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 39 0.004
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 39 0.005
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981... 31 0.71
05_03_0635 - 16446805-16447716 31 0.94
02_02_0637 - 12491706-12492575,12492580-12492657 30 2.2
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 29 2.9
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 29 3.8
05_03_0517 - 14936085-14936867 29 5.0
04_04_0673 - 27168305-27168874,27168977-27169099,27169180-271694... 29 5.0
10_06_0012 - 9586478-9588880 28 8.7
09_06_0037 + 20389976-20391016,20391103-20391723 28 8.7
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 28 8.7
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 28 8.7
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/71 (47%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Frame = +2
Query: 11 PHKGPRITQPVTISK--IPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARG 184
P+KG ++ + +S+ IP +QR G IVPR++R RRSS M +DP+TLV+AL+++++A G
Sbjct: 756 PYKGG-VSHKLEVSEDSIPSFQRAGAIVPRKDRFRRSSTQMVNDPYTLVIALNSSSAAEG 814
Query: 185 SLYIDDGETYE 217
LY+DDG++Y+
Sbjct: 815 ELYVDDGKSYD 825
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 62 VYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDGETYE 217
+Y RGG ++P + DD +L++ALD N A G L+ DDG+ YE
Sbjct: 635 MYLRGGAVLPIGLPLNHVGEAKLDDNLSLIIALDENGKAEGVLFEDDGDGYE 686
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 20 GPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYID 199
G R+T P + V+ GG I+ ++ SS + L+VAL + +A G L++D
Sbjct: 465 GKRVTLPAPADTVNVHVAGGNILTLQQPALTSSRVR-QSVVHLLVALAEDGTATGDLFLD 523
Query: 200 DGETYE 217
DGE+ E
Sbjct: 524 DGESPE 529
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 20 GPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYID 199
G R+T P + V+ GG I+ ++ SS + L+VAL + +A G L++D
Sbjct: 789 GKRVTLPAPADTVNVHVAGGNILTLQQPALTSSRVR-QSVVHLLVALADDGTATGDLFLD 847
Query: 200 DGETYE 217
DGE+ E
Sbjct: 848 DGESPE 853
>04_03_0144 +
11796550-11797178,11797808-11797902,11798053-11798102,
11798382-11799293
Length = 561
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 549 CKRRSTNADHVHYQASSVASVGEGDGPGSGHASGRLPQHQHVVAL 415
C +T H++ S AS G+G G G A G+LP V+L
Sbjct: 22 CSFSATPQSPDHHRPLSAASAAGGEGVGGGGARGKLPPKSPSVSL 66
>05_03_0635 - 16446805-16447716
Length = 303
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 183 PRAELLASSATTRVKGSSAISAEERRTRSRRGTMVPPRWYTGIL-EMVTGCVMR 25
P A A SA+T V GSSA AEE + M W ++ +M+T V R
Sbjct: 211 PGAAAAAISASTVVGGSSAARAEEEAVAREKARMEQDPWLMAMMRQMITEEVQR 264
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = -3
Query: 485 AKVMVQGLAMLAAGFLSTSTSLPLCSVICSAVCRPSCCSRALRGAALMPATTTRSSHAPV 306
A +++ L + + S S P S IC P SR R + PA T ++H+P
Sbjct: 72 ALLILYNLLLCSTCRAGCSASPPASSWICGTEGSPPTRSRTPRSSRRSPARATSTTHSPF 131
Query: 305 GY------WAPSLASVYVISSGPT 252
+ W P+ S S+ P+
Sbjct: 132 CHSWRTTPWLPTSCSSPTSSTSPS 155
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 298 QYPTGAWLERVVVAGIRAAPRSARLQQDGRQTALQMTLHKG-NDVLVLRKPAASMARPWT 474
++ G WL R AG+R PR L +D R+ +L +H G DV A + A+P T
Sbjct: 520 RFAPGKWLVRAG-AGLREPPREEALWRDARRVSL---MHNGIEDVPAKTGGALADAQPET 575
Query: 475 I 477
+
Sbjct: 576 L 576
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 507 ASSVASVGEGDGPGSGHASGRLPQHQHVVA 418
+SS S G G G GSG GRL H+VA
Sbjct: 39 SSSSTSGGGGGGGGSGGVLGRLDLSTHIVA 68
>05_03_0517 - 14936085-14936867
Length = 260
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 150 TRVKGSSAISAEERRTRSRRGTM-VPPRWYTGILEMVTGCVMR 25
TR ++A SAE RRT S GT PR + L ++ GC R
Sbjct: 133 TRPPSAAAASAEPRRTASGSGTCPSSPRMRSRRLHVLGGCECR 175
>04_04_0673 -
27168305-27168874,27168977-27169099,27169180-27169440,
27169723-27169970,27170403-27170483,27171530-27171902
Length = 551
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 543 RRSTNADHVHYQASSVASVGE---GDGPGSGH 457
R S A+HVH +VGE G+ PG+GH
Sbjct: 205 RASRRAEHVHVVVGEHEAVGELLGGEHPGAGH 236
>10_06_0012 - 9586478-9588880
Length = 800
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 554 SYVRGDRRMQITYTI-KRRVSHQ*AKVMVQGLAMLAAGFLST---STSLPLCSVICSAVC 387
+YV DR + ++YT+ K +++H V +GLA + L + +P+ A+C
Sbjct: 236 TYVNNDREVYLSYTLTKEKITHAGIDVNGRGLAGIWLDSLQNWLINYRMPILHCDVYAIC 295
Query: 386 RP-SCCS 369
P S C+
Sbjct: 296 GPFSVCN 302
>09_06_0037 + 20389976-20391016,20391103-20391723
Length = 553
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 311 GRGWSAWWWPASGRRRGVP 367
G W WWW RRRG P
Sbjct: 55 GPAWGRWWWTRR-RRRGSP 72
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 498 VASVGEGDGPGSGHASGRLPQHQHVVALV 412
VA+V P S AS RLP H H V LV
Sbjct: 8 VATVTCASSPRSSLASLRLPLHDHAVTLV 36
>01_04_0124 +
16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 471 DHHLRLLMRHSTLDSVRDLHSSIASYIGISSKFDYV-RYID 590
D+ ++ R + ++ V L SI SYI S +FDYV RY++
Sbjct: 623 DYGFKITSRSAFVEIVIFLLVSIQSYIFSSGEFDYVSRYLE 663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,589,430
Number of Sequences: 37544
Number of extensions: 352500
Number of successful extensions: 1942
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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