Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021844
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13631| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_50480| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_8156| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_40710| Best HMM Match : RVT_1 (HMM E-Value=1.7e-25)                 28   6.7  
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             28   8.9  
SB_25282| Best HMM Match : rve (HMM E-Value=6.3e-12)                   28   8.9  

>SB_13631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 301 YPTGAWLERVVVAGIRAAPRSARL-QQDGRQTALQMTLHKGNDVLVLRKPAASMARPWTI 477
           + T A +ER+V+ GI  +P+S  L   D     LQ T  K    L ++KPA + A  WTI
Sbjct: 26  FKTKAEIERIVILGISNSPKSVVLTSSDTVNRQLQFTHDKSAYTLTIKKPAVNAASEWTI 85


>SB_50480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 59  PVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNS--ARGSLYIDDGET 211
           P++ RGG+I+   ++   ++A    +PF L+VA    +   A G L++DDGE+
Sbjct: 25  PLHIRGGSIIAT-QKPDITTAASRKNPFELIVAKTGKDGEPANGRLFLDDGES 76


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 413  CSVICSAVCRPSCCSRALRGAALMP 339
            CSVIC   C  SCCS   + A L P
Sbjct: 1140 CSVICLPNCPASCCSGHQKSAVLTP 1164



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 413  CSVICSAVCRPSCCSRALRGAALMPATTTRSS 318
            C  +CS  C P C S+    + + P   T SS
Sbjct: 2247 CPSVCSTTCLPFCPSKCCTSSTVTPVQPTTSS 2278



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 422  LPLCSVICSAVCRPSCCSRALRGAALM 342
            +P C   C+ +CRP C  +   G+ L+
Sbjct: 1971 VPTCPPSCNLICRPDCMIKCCSGSKLV 1997


>SB_8156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 23  PRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYI 196
           P++   + I K+ V   GG     R  V  SS+ +    FTLV  +   +S RGS Y+
Sbjct: 162 PKLESTMNIIKLEVCYDGGN----RNAVTASSSCLIGARFTLVALICKRSSIRGSWYL 215


>SB_40710| Best HMM Match : RVT_1 (HMM E-Value=1.7e-25)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 304 PTGAWLERVVVAGIRAAPRSARLQQDGRQTALQMTLHKGNDVLVLRKPAASMAR 465
           P G ++ R +  GI +AP+  + + D     L+ TL   +D+LV+ K  A   R
Sbjct: 183 PFGRYMFRRLPYGISSAPQYFQKKMDQELAGLEGTLCHMDDILVVGKDQAEHDR 236


>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 486  GEGDGPGSGHASGRLPQHQH 427
            G+G G GSG A GR+  H H
Sbjct: 980  GDGVGEGSGGAGGRIAAHVH 999


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 419 PLCSVICSAVCRPSCCSRALRGAALMPATTTRSSHAP 309
           P+C   C  +C   CC++  + AA   A T   + AP
Sbjct: 616 PICLKFCVTLCPQKCCNKG-KAAAAAAAPTKPPTAAP 651


>SB_25282| Best HMM Match : rve (HMM E-Value=6.3e-12)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -3

Query: 464 LAMLAAGFLS---TSTSLPLCSVICSAVC-RPSCCSRALRGAALMPATTTRSSHAPVGYW 297
           LA + AG L    T++ L LCS  CSA   RP    R   G+AL  +    S  AP    
Sbjct: 123 LAYIGAGALVIGYTASRLLLCSCRCSAASRRPFSILRVYTGSALRGSPMPFSEGAPTSER 182

Query: 296 AP 291
            P
Sbjct: 183 PP 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,375,877
Number of Sequences: 59808
Number of extensions: 361968
Number of successful extensions: 1567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)