Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021844
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    25   1.8  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    25   3.2  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   4.2  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   9.7  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 7   RAAQRTPHHAAGHHLQDPGVPARRNHSAAPGARATLLRA 123
           RA    P   AG+  Q  GV  R+N +    AR  L+ A
Sbjct: 158 RAKGIVPQFTAGYSPQQNGVAERKNRTLVEMARCMLIDA 196


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 486 GEGDGPGSGHASGRLPQHQHVVALV 412
           G   G GSG +SG L  H H  ++V
Sbjct: 257 GGSGGAGSGGSSGNLGSHLHHPSIV 281


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = -2

Query: 552  LCKRRSTNADHVHYQASSVASVGEGDGPGSGHASGRLPQH 433
            L  RR     H           G G G G+G A    P H
Sbjct: 1489 LLNRRQRKKQHTESSDDENGGSGGGSGSGAGGAGSAGPNH 1528


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 443 FLSTSTSLPLCSVICSAVCRPSCCSRALRGAALMPATTTRSSHA 312
           +L  +T   +  V+CS  C      RAL   ++M   TT+S  A
Sbjct: 445 WLQKATEHVIGCVLCSPGCFSLFRGRALMENSVMKKYTTKSDQA 488


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,210
Number of Sequences: 2352
Number of extensions: 12196
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)