Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021844
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 81 1e-15
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 81 1e-15
AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical ... 50 2e-06
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 43 3e-04
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 42 6e-04
U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical pr... 38 0.010
U40943-5|AAK39235.2| 279|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z71185-7|CAA94907.2| 520|Caenorhabditis elegans Hypothetical pr... 28 5.9
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 17 KGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYI 196
+G I I+ P+YQRGGTI+P +R+RRS+ LM DDP TL VALD+N ++ G +Y+
Sbjct: 749 RGESIYVDAPITFTPIYQRGGTIIPTWQRIRRSATLMKDDPITLFVALDSNENSNGEIYL 808
Query: 197 DDGETYE 217
DDG T++
Sbjct: 809 DDGNTHD 815
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 298 QYPTGAWLERVVVAGIRAAPRSARLQQ-DGRQTALQMTLHKGNDVLVLRKPAASMARPWT 474
+Y W+ERVVV G+ ++P+ + + +L+ + + VLV+RKP A + +
Sbjct: 846 KYAAKNWIERVVVRGVESSPKKVEITRVSDPVQSLEFSYDHDSKVLVIRKPEALLTSSFK 905
Query: 475 I 477
+
Sbjct: 906 V 906
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 17 KGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYI 196
+G I I+ P+YQRGGTI+P +R+RRS+ LM DDP TL VALD+N ++ G +Y+
Sbjct: 763 RGESIYVDAPITFTPIYQRGGTIIPTWQRIRRSATLMKDDPITLFVALDSNENSNGEIYL 822
Query: 197 DDGETYE 217
DDG T++
Sbjct: 823 DDGNTHD 829
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 298 QYPTGAWLERVVVAGIRAAPRSARLQQ-DGRQTALQMTLHKGNDVLVLRKPAASMARPWT 474
+Y W+ERVVV G+ ++P+ + + +L+ + + VLV+RKP A + +
Sbjct: 860 KYAAKNWIERVVVRGVESSPKKVEITRVSDPVQSLEFSYDHDSKVLVIRKPEALLTSSFK 919
Query: 475 I 477
+
Sbjct: 920 V 920
>AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical
protein F52D1.1 protein.
Length = 903
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 TYVPHKGPRITQ-PVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNS- 175
T+ P Q P ++ I +Y RGGTI+P+ V+ ++ + P L +A++
Sbjct: 733 THKARPSPGAVQIPAELNTIGLYHRGGTIIPKLSEVKLTTKENHEQPIILYIAVNQKGDF 792
Query: 176 ARGSLYIDDGETY 214
A G++Y+DDGE+Y
Sbjct: 793 ANGTIYLDDGESY 805
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +2
Query: 44 TISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDGET 211
T S+IPV+ RG +++PR+ ++A ++ PF L++A G+LY DDGET
Sbjct: 765 TTSRIPVFVRGYSVIPRQTPSITTTATRSN-PFELLIAPCPLGMGEGTLYWDDGET 819
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 29 ITQPV-TISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDG 205
IT P T S+IPV+ RGG ++P R+ ++ + +PF L++A A G LY DDG
Sbjct: 692 ITVPSPTTSRIPVFVRGGYVIP-RQTPTTTTTMSRLNPFELLIAPCQLGRAAGVLYWDDG 750
Query: 206 E 208
+
Sbjct: 751 Q 751
>U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical
protein D2096.3 protein.
Length = 936
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 50 SKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDGE 208
S PV+ RGG ++PR+ ++A PF L++ + N ++ G LY D G+
Sbjct: 772 SLTPVFVRGGFVLPRQSPGTTTTASRLS-PFELLITVKTNAASSGDLYYDGGD 823
>U40943-5|AAK39235.2| 279|Caenorhabditis elegans Hypothetical
protein F47F2.3 protein.
Length = 279
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -3
Query: 404 ICSAVCRPSCCSRALRGAALM-PATTTRSSHAPVGY 300
+C AVC P C + LM P H P GY
Sbjct: 134 VCKAVCMPDCTEECITAPPLMVPCIFDNVCHCPAGY 169
>Z71185-7|CAA94907.2| 520|Caenorhabditis elegans Hypothetical
protein C35A5.5 protein.
Length = 520
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 465 TLDHHLRLLMRHSTLDSVR-DLHSSIASYIGISSKFDYVRYIDMSNELTY 611
T+D+ +RL + +S++DSV +LHS + + G S Y +Y + + +T+
Sbjct: 236 TIDYWMRLKLANSSVDSVEPNLHSELRNQAGAQSDCLY-QYKEAAAFITF 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,741
Number of Sequences: 27780
Number of extensions: 260390
Number of successful extensions: 933
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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