Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021844
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 73  RRNHSAAPGARATLLRAD 126
           +R HS  PG    LLRAD
Sbjct: 107 KRLHSRLPGRNFNLLRAD 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +1

Query: 22  TPHHAAGHHLQDP--GVPARRNH 84
           +PHH  G+H   P  G P   +H
Sbjct: 333 SPHHQHGNHTMGPTMGPPHHHHH 355


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 459 GQTLDHHLRLLMRHSTLDSVRDLHSSIASYIGISSKFDYVRYIDMSNEL 605
           G +LD   + +   S  ++V  L++ I  +  ISS +     + + NEL
Sbjct: 254 GASLDTQFKKIYM-SRHENVSILYADIVGFTAISSTYSASELVKILNEL 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,330
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)