Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021844
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ... 78 7e-15
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si... 38 0.007
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al... 35 0.064
At4g36970.1 68417.m05239 remorin family protein contains Pfam do... 31 0.78
At5g54550.1 68418.m06791 expressed protein contains Pfam profile... 28 5.5
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 5.5
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 28 5.5
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 28 5.5
At5g66300.1 68418.m08359 no apical meristem (NAM) family protein... 28 7.3
At5g65440.1 68418.m08230 expressed protein 27 9.6
>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
alpha-glucosidase GI:2648032 from [Solanum tuberosum]
Length = 921
Score = 77.8 bits (183), Expect = 7e-15
Identities = 36/72 (50%), Positives = 52/72 (72%)
Frame = +2
Query: 2 TYVPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSAR 181
TYV K ++ P IP +Q+ GTI+PR++R RRSS+ M +DP+TLVVAL+++ A
Sbjct: 753 TYVGGKTHKMDAPE--ESIPAFQKAGTIIPRKDRFRRSSSQMDNDPYTLVVALNSSQEAE 810
Query: 182 GSLYIDDGETYE 217
G LYIDDG+++E
Sbjct: 811 GELYIDDGKSFE 822
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +1
Query: 280 LASEGAQYPTGAWLERVVVAGIRAAPRSARLQQDGRQTALQM--------TLHKGNDVLV 435
LA A+ + ++R+++ G + P+SA ++ ++ ++M G VL
Sbjct: 845 LAPPEARLSSQCLIDRIILLGHSSGPKSALVEPLNQKAEIEMGPLRMGGLVASSGTKVLT 904
Query: 436 LRKPAASMARPWTI 477
+RKP + + WT+
Sbjct: 905 IRKPGVRVDQDWTV 918
>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
thermoamyloliquefaciens]; contains Pfam profile: PF01055
Glycosyl hydrolases family 31
Length = 991
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 62 VYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNSARGSLYIDDGETY 214
+Y +GG+I+ D TL+V+LD N A+G L+ DDG+ Y
Sbjct: 598 LYLQGGSIISLAPPHLHVGEFSLSDDLTLLVSLDENGKAKGLLFEDDGDGY 648
>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
[Arabidopsis thaliana]; contains Pfam profile PF01055:
Glycosyl hydrolases family 31; identical to cDNA
alpha-xylosidase precursor (XYL1) partial cds GI:4163996
Length = 915
Score = 34.7 bits (76), Expect = 0.064
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 8 VPHKGPRITQPVTISKIPVYQRGGTIVPRRERVRRSSALMADDPFTLVVALDANNS---A 178
V G R+T P ++ + V+ TI+P ++ S PF+LV+A A S A
Sbjct: 729 VSKNGKRVTLPAPLNFVNVHLYQNTILPTQQGGLISKDART-TPFSLVIAFPAGASEGYA 787
Query: 179 RGSLYIDDGETYE 217
G LY+D+ E E
Sbjct: 788 TGKLYLDEDELPE 800
>At4g36970.1 68417.m05239 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 427
Score = 31.1 bits (67), Expect = 0.78
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = -2
Query: 366 GTPRRRPDAGHHHALQPRPGRVLGALARERVRHLVGADSILA*XYLLFLYS*VSPSSMYR 187
G P + G P P + A R +G+ S L + YS + S +
Sbjct: 18 GAPSYADNKGWSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPF----YSGRAIPSKW- 72
Query: 186 EPRAELLASSATTRVKG---SSAISAEERRTRSRRGTMVPP 73
E + S +T +G +S++S+E+RR +S+ G +VPP
Sbjct: 73 EDAERWICSPVSTYPQGVCLNSSVSSEQRRQKSKSGPIVPP 113
>At5g54550.1 68418.m06791 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 359
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 458 MLAAGFLSTSTSLPLCSVICSAVC 387
+L+ GF S+S P CS+IC+ C
Sbjct: 25 ILSNGFSSSSLQTPPCSIICANPC 48
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 357 RRRPDAGHHHALQPRPGRVLGALARERVRHLVG 259
+R AGHHH LQ R R +A+ VR G
Sbjct: 463 QRNRHAGHHHELQTRRLRERQRVAKRHVRPTAG 495
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 383 PSCCSRALRGAALMPATTTRSSHAPVGYWAP 291
P CC + G A+ P T R +H W P
Sbjct: 666 PRCCLCPVVGGAMKPTTDGRWAHLACAIWIP 696
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 383 PSCCSRALRGAALMPATTTRSSHAPVGYWAP 291
P CC + G A+ P T R +H W P
Sbjct: 648 PRCCLCPVVGGAMKPTTDGRWAHLACAIWIP 678
>At5g66300.1 68418.m08359 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 292
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 250 RVGPDEMT--YTLASEGAQYPTGAWLERVVVAGI-RAAPRSARLQQDGRQTALQMTL 411
R+G +E T Y + +YPTG R VAG +A R + + + ++ TL
Sbjct: 62 RIGYEEQTEWYFFSHRDKKYPTGTRTNRATVAGFWKATGRDKAVYLNSKLIGMRKTL 118
>At5g65440.1 68418.m08230 expressed protein
Length = 1050
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 452 LAWPDPGPSPSPTDATL 502
L WP PGPSP+ D +
Sbjct: 682 LVWPPPGPSPAVVDLVI 698
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,698
Number of Sequences: 28952
Number of extensions: 235271
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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