Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021843
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    29   1.1  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    27   4.3  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   4.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.9  

>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 503 ACNYFTVETTPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTLGG-YLFDGTVL 661
           A   FT ET+P+   Y   V I PEE  + + K +  +  +  G  Y +DGT++
Sbjct: 199 AIKKFT-ETSPEMLTYLKKVTIIPEESVSSMLKVVDNLKPENNGSFYRYDGTII 251


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 625 FTVNTHQCLSDSSAVFFWRNIDVILIQAPFGSCFNSKI 512
           F   + + + DS   F W  +DV++     G C   KI
Sbjct: 56  FLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKI 93


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 379 DDASPPPDEWGPSSNFCMRCCTSISP 302
           +D+SPP +   PS  FC  C T+ +P
Sbjct: 159 EDSSPPHE---PSVTFCQNCATTNTP 181


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -2

Query: 704 SIAPWDQDADDLQCTTQCHQRDILRVFYCEHASVPFGLQCCLLLEKYRRD 555
           S+  W+ +  +L C TQ  Q  +  + + E  ++ F  +C   + K   D
Sbjct: 319 SMENWENEMKNLDCETQVRQLALYLLCWGEANNIRFCPECLCFIFKLAND 368


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 405  LFESHGQLRMMHHHLQMNGVPVLIFAC-VVAHRYLL 301
            L+ SHG L  + H+++ N   + I  C ++ H +L+
Sbjct: 1267 LYHSHGLLPAILHYIESNNSAMHISDCLILLHEFLV 1302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,681
Number of Sequences: 5004
Number of extensions: 60282
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)