Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021843
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 35 0.068
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 33 0.36
05_03_0149 - 8935172-8935254,8935792-8937319 31 1.1
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 31 1.1
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 31 1.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 30 1.9
07_01_0387 + 2902957-2904705 29 3.4
05_04_0062 + 17607290-17608852 29 4.5
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 29 5.9
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 5.9
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608 29 5.9
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 35.1 bits (77), Expect = 0.068
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +2
Query: 503 ACNYFTVETTPKWGLYQYHVDISP---EEDSTGVRKALMRVHSKTLGGY--LFDGTV-LY 664
+ N+F V+ P ++ Y+VDISP +E + ++K L+ + L G FDG LY
Sbjct: 217 SANHFLVQFDPGQKIFHYNVDISPRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKNLY 276
Query: 665 TVNRLHPDPMELY 703
+ R D +E +
Sbjct: 277 SPVRFQEDRVEFF 289
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +2
Query: 509 NYFTVETTPKWGLYQYHVDISPEEDSTGVRKALM----RVHSKT-LGG--YLFDGT-VLY 664
N+F V + +Y Y V +SP + + + +M R+H ++ LGG + +DG+ LY
Sbjct: 210 NHFLVRVSDNDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGGISFAYDGSKALY 269
Query: 665 TVNRLHPDPME 697
T +L D M+
Sbjct: 270 TAGKLPFDSMD 280
>05_03_0149 - 8935172-8935254,8935792-8937319
Length = 536
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 494 GSTRSTFLRCYSFWTCAQDGNSFRKDSSTPSSRATANYG 378
G T+ST+ C+ F T A + + R S P S YG
Sbjct: 14 GCTKSTYTECHGFTTPAAEDRALRGTSPRPPSSFLLRYG 52
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 509 NYFTVETTPKWGLYQYHVDISPEEDSTGVRKALM 610
N+F E K L+QY V I+PE S GV +A+M
Sbjct: 326 NHFFAELPDK-DLHQYDVSITPEVTSRGVNRAVM 358
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 509 NYFTVETTPKWGLYQYHVDISPEEDSTGVRKALM-----RVHSKTLGGYL--FDG-TVLY 664
N+F E K L+QY V I+PE S GV +A++ + LGG L +DG LY
Sbjct: 209 NHFFAELPDK-DLHQYDVSITPEVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRKSLY 267
Query: 665 TVNRL 679
T L
Sbjct: 268 TAGPL 272
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 317 ATTHAKIRTGTPFIWRW*CIIRSWPWLSKRGWK 415
+++H+++ T + WRW I R + W +RG++
Sbjct: 55 SSSHSRVSDETLWQWRWRQITRPYSWRCRRGFR 87
>07_01_0387 + 2902957-2904705
Length = 582
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 581 DSTGVRKALMRVHSKTLGGYLFDGTVLYTVNRLHPDPMELYSDRKTDNERMR 736
D VR +H+ G +LFDG + RL E Y+ R T+ R+R
Sbjct: 123 DGVYVRNGANPLHAPRAGHHLFDGDGMLHAVRLAGGRAESYACRFTETARLR 174
>05_04_0062 + 17607290-17608852
Length = 520
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 216 SSSKSWCPDTNSTAGRASHRVTPTTHEHPGDIDV 317
SS S +N++ G +HR P ++ PGDID+
Sbjct: 59 SSYYSSSMSSNASGGPHNHRYAPYSNSSPGDIDL 92
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Frame = +2
Query: 437 HLAHTSRSCNI*ERYFGYSPGSAC----NYFTVETTPKWGLYQYHVDISPEED----STG 592
H+ +++S R S G+ C N+F + K L+QY V I+PE S
Sbjct: 161 HVPVSTKSFKFPHRPGSGSIGTRCLVKANHFFAQLPDK-DLHQYDVSITPELTSRIRSRA 219
Query: 593 VRKALMRVHSKT-LGGYL--FDG-TVLYTVNRL 679
V + L+R+H + LGG L +DG LYT L
Sbjct: 220 VMEELVRLHKMSYLGGRLPAYDGRKSLYTAGPL 252
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 530 TPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTL 631
T +WG YHV +S DS G++K L ++ ++
Sbjct: 659 TDEWGRSFYHVRMSDRVDSCGLKKILEYTYTNSV 692
>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
Length = 241
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 334 FCMRCCTSISPGCS 293
FC+ CCTSI P C+
Sbjct: 34 FCLACCTSICPHCA 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,909,604
Number of Sequences: 37544
Number of extensions: 413850
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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