Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021843
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         65   6e-11
SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)                  30   2.0  
SB_46308| Best HMM Match : IMS (HMM E-Value=0)                         29   4.6  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   4.6  
SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                    28   8.0  

>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
 Frame = +2

Query: 485 GYSPGSACNYFTVETTPKWGLYQYHVDISPEEDSTGVRKALMRVHSKTLGGY-LFDGTVL 661
           G   G   NYF +ET P+  +YQY+V  SPE D    R AL+    + LG    FDG VL
Sbjct: 40  GTKVGIVSNYFRLETRPQAAIYQYNVSFSPEVDFKKARFALIGEQRELLGNIRAFDGMVL 99

Query: 662 YTVNRLHPDP----MELYSDRKTDNERMRILIKLTCEVALGDYHYIQIFNIIIRK 814
           +   +L PD     M + + R+T +E + I I LT E+       + +FNII+++
Sbjct: 100 FLPKKL-PDQVTKIMAVRTRRETPDEPVEITITLTNELPADSPTCLHLFNIILKR 153


>SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)
          Length = 952

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
 Frame = +2

Query: 545 LYQYHVDISPEEDSTGVRKALMRVHSKTLGG-YLFD-GTVLYTVNRLHPDPMELY--SDR 712
           LYQY ++ SP+ +    R   +R    T+G  +L+D G +++   +L PD +     S R
Sbjct: 401 LYQYSLEFSPDLEHKAKRMQAIRSIENTIGEVWLYDKGQMMFLPVQL-PDEITCCQGSIR 459

Query: 713 KTDNER---MRILIKLTCEVALGDYHYIQIFNIIIRKCFN 823
           + D      +++ I   C+V      + Q+ N I+ +  N
Sbjct: 460 RRDTPEGVPVQVTITYRCDVLANSPSFGQVLNTIMARYNN 499


>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
          Length = 1245

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 223 VRAGVPTPTAQRVAPHTVLLPLHMN 297
           VRA +P   A+++ PH +++PLH +
Sbjct: 699 VRAAMPGFIAKKLCPHLIIVPLHFD 723


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 346 PSSNFCMRCCTSISPGCSCVVGVTRCEARPAVLLVSGHQLLLEEHWIV 203
           P     M CC  +   CSC V    C    AVL V+ H +L   H ++
Sbjct: 16  PCCVLLMSCCVMLMWYCSCRVACCSCRVAHAVLRVA-HAVLRVAHAVL 62


>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 319 CTSISPGCSCVVGVTRCEARPAVLLVSGHQLLLEEHWIVVPSQM 188
           C S  P   C+  +T CE  PA    + + L+LE    + P+Q+
Sbjct: 726 CASREPQLCCLSALTLCEKEPAA-FEAAYYLVLEAASSISPTQL 768


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,167,387
Number of Sequences: 59808
Number of extensions: 487786
Number of successful extensions: 1276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)