Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021843
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    53   3e-07
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    52   4e-07
Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    29   5.3  
Z75550-13|CAA99922.2|  111|Caenorhabditis elegans Hypothetical p...    28   7.1  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 539 WGLYQYHVDISPEEDSTGVRKALMRVHSKTL---GGYLFDGTVLYTVNRLHPDPMELYSD 709
           + +YQYHV+  P  DS   R+ ++R  S T+     ++FDG +LY       + M +   
Sbjct: 6   YSIYQYHVEFEPTVDSKATRENMLRQPSVTVEIGKHFVFDGMILYLKEEWDQNQM-IEVQ 64

Query: 710 RKTDNERMRILIKLTCEVALGDYHYIQIFNIIIRKCFN 823
              DN  + I  K T    + D   I IFN IIR+ F+
Sbjct: 65  HPNDNSLICIRFKKTNRFLVDDPQTINIFNTIIRRSFD 102


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
 Frame = +2

Query: 509 NYFTVETTPK-WGLYQYHVDISPEEDSTGVRKALMRVHSKT--LG-GYLFDGTVLYTVNR 676
           N+  +E T   + +YQYHV+  P  DS   R+ ++R ++ T  +G  ++FDG +LY    
Sbjct: 55  NFIPIEMTQSDYSIYQYHVEFEPTVDSKANREKMLRDNNVTDEIGHHFVFDGMILYLKEE 114

Query: 677 LHPDPMELYSDRKTDNERMRILIKLTCEVALGDYHYIQIFNIIIRKCFN 823
              + M +      D   + I  K T    + D   I IFN IIR+ F+
Sbjct: 115 WEQNQM-IEVQHPIDRSLICIRFKQTNRFLVDDPQTINIFNTIIRRSFD 162


>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 726 SLSVLRSEYSSMGSGCRRFTVYNTVPS 646
           ++++ +SE+ ++  GC+RF VY  VP+
Sbjct: 402 AINLRKSEFENVLDGCKRFMVYRKVPN 428


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 665 CTTQCHQRDILRVFYCEHASVPFGLQCCLL 576
           C  QC Q   L+ FYC   +  FGL+ C+L
Sbjct: 345 CMRQCAQS--LQNFYCASINYSFGLKICIL 372


>Z75550-13|CAA99922.2|  111|Caenorhabditis elegans Hypothetical
           protein T22C1.4 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 518 TVETTPKWGLYQYHVDISPEEDSTGVRKAL 607
           T+E TP+W   + H  ISP++D +   K L
Sbjct: 8   TLEGTPEWMAIELHGAISPQDDGSFDSKTL 37


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 488 YSPGSACNYFTVETTPKWGLYQYHVDISPEEDST 589
           +S G++C+   V+T P +GL   + ++ P + ST
Sbjct: 393 FSDGNSCSRCPVDTVPNYGLQYQNWEVLPPKLST 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,891,881
Number of Sequences: 27780
Number of extensions: 351829
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)