Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021843
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.9  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = -3

Query: 370 SPPPDEWGPSSN--FCM 326
           SPPP++W P     FC+
Sbjct: 415 SPPPEDWKPLDKCYFCL 431



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 441 RWK*FQEGLFHPLFESHGQLRMMHHHL 361
           RWK +Q+ L+     S       HH L
Sbjct: 45  RWKQYQDTLYSGTRSSESLTAQAHHRL 71



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 399 ESHGQLRMMHHHLQMNGV 346
           + H  L+  HHHLQ   V
Sbjct: 139 QRHHHLQNHHHHLQSTAV 156


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 192 WLGTTIQCSSSKSWCPDTNSTAGRASHRVTP 284
           W  + + CS      P +   +GR   R TP
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRRRRRTP 415


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 443 QDGNSFRKDSSTPSSR 396
           +DGNS+R D     SR
Sbjct: 240 EDGNSYRNDGERSCSR 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,519
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)