Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021843
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19110.1 68418.m02273 extracellular dermal glycoprotein-relat...    30   2.1  
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein...    28   6.5  

>At5g19110.1 68418.m02273 extracellular dermal glycoprotein-related
           / EDGP-related similar to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741
          Length = 405

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 544 APFGSCFNSKIVASRSRGVPEVPFLDVTASGRVRKME 434
           APF  CF+S+         P VP +++   GR+ +++
Sbjct: 296 APFKHCFDSRTAGKNLTAGPNVPVIEIGLPGRIGEVK 332


>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 349

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -3

Query: 331 CMRCCTSIS---PGCSCVVGVTRCEARPAVLLVS 239
           C  CCT +    P C+  +G  RC A   V+  S
Sbjct: 134 CTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEAS 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,696
Number of Sequences: 28952
Number of extensions: 323070
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)