Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021842
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.47
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 28 1.9
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.3
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 3.3
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 4.4
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.4
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 4.4
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 4.4
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 26 5.8
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 26 5.8
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.8
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 26 5.8
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 5.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.6
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 26 7.6
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 7.6
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 384 GGDVKQTEAELLSRVLGKINQTSTTLSDLLVGMKVDRTVEPEKSN 518
GGD ++ AE + ++ + Q++T +D L V+ + EP SN
Sbjct: 316 GGDWEKAYAEDFADLINRAKQSTTNKNDSLRNTAVESSTEPSTSN 360
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/78 (17%), Positives = 36/78 (46%)
Frame = +3
Query: 297 SKQADEIEVKTEKIEESITKAASDVAQAIGGDVKQTEAELLSRVLGKINQTSTTLSDLLV 476
S+++D + T+ + + + + GG+ ++ LLS +LGK+ + + + +
Sbjct: 874 SEKSDLLNTHTDFVNAIRSPLIAKILLGFGGNASRSSLPLLSDILGKLKAQNFSATRACL 933
Query: 477 GMKVDRTVEPEKSNKNRI 530
++ P ++ N I
Sbjct: 934 TQSLEEEGFPSRNVSNEI 951
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 166 KKKTVKNDPATEKIQELLKSMMAPPKISEASTEKNSQ 276
+++ V++ + K+QE+LK + + PK+ + S N Q
Sbjct: 96 RQRLVQHFESKTKLQEILKPLSSDPKLKQPSNCLNDQ 132
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 512 VQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNR 661
+ +KP + LV ++ +T S + Q+ A++PN T + D+N+
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNK 446
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 297 SKQADEIEVKTEKIEESITKAASDVAQAIGGDVKQTEAELLSRVLGKINQTSTTLSDLL 473
S++++ E + E++EE TK +A D+++TEAE LSR + + + T LL
Sbjct: 47 SRKSEAAESQLEELEEE-TKQLR--LKADNEDIQKTEAEQLSRKVELLEEELETNDKLL 102
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +1
Query: 76 KFRKDLRVIARCLSDKSKDNDGKPQVIQDAKKKTVKNDP----ATEKIQELLKSMMAPPK 243
K +D I DK+ + D Q IQ +K KN P + +++ APP+
Sbjct: 119 KRERDWNEIEENFEDKTWEADTTGQFIQIESRKKRKNSPDPWANLQTKPSFGETVQAPPE 178
Query: 244 ISEASTEKNSQHLQILGEVN 303
+ E K +++L+ + +VN
Sbjct: 179 LPELKI-KETKYLENVPKVN 197
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 237 SKNK*SEYREKFATSPDTRRSKQAD-EIEVKTEKIEESITKAASDVAQA 380
S ++ S E F S D K+ + E+EVKT E +TK + ++A
Sbjct: 121 SADRLSREIEMFGPSFDVPEEKEEEVEVEVKTPNAREDVTKHSGKKSKA 169
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 574 CLCFAYKSFHLLLSSIRFLLDFSGSTVLSTFI 479
C+ S LLLSS+ +L F GST STFI
Sbjct: 332 CILLFTHSLALLLSSLEMVLAFVGSTG-STFI 362
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 536 EQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGT 670
E+Q+K+L A+ A+P + S++KSA RTR R+S+ S T
Sbjct: 184 ERQLKQLPD-AEQPAAAPVKKSKQKSASTAPPRTR--RNSSVSST 225
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 687 LIYLVVSHLVYSRQQNQTMEQNWMFGEPKETRAKFSNCTASGQLFPEND 833
++YLV S+ ++NQ + + + P+E++ + ++ Q P N+
Sbjct: 91 VVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNIQAHPFNE 139
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 817 NWPEAVQLLNLALVSLGSPNIQFCS 743
NWP +++LLN AL L + QF S
Sbjct: 49 NWPVSIKLLNTALYGLTTFAAQFNS 73
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 252 SEYREKFATSPDT-RRSKQADEIEVKTEKIEESITK 356
S ++ K D RR ++ +IE++ +K EES+ K
Sbjct: 11 SRFKSKGVFKADELRRQREEQQIEIRKQKREESLNK 46
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 758 HPVLFHSLVLLS*IYQVAHHQIYQFL*FVEYHFC 657
+PV+ SL++LS IY++ + Q++ + H C
Sbjct: 498 YPVVQKSLIILSKIYRLVNSQVFDEIALELVHSC 531
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -3
Query: 527 PVFVGLLRFYCSVYLHPN*KVTESGRSLIDFPKYTR*KFCFCLFDITPDSLSNITSSFCD 348
PV + LL Y S + P +S + L+ T F CL ++TPD L I + + +
Sbjct: 775 PVRLSLLLPYMSYLMRPLVMSLKSSQELVSQGLRT---FELCLDNLTPDFLDPIMAPYIE 831
Query: 347 ALL 339
L+
Sbjct: 832 DLM 834
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 244 FLEVPSCFSTVLESFQ*PDHFLRFSSWHLELLEAS 140
F+E+ SCFS VL +F ++ SS +L +S
Sbjct: 3802 FIEMSSCFSKVLRAFNLKFQSMKLSSLKEKLRSSS 3836
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 512 VQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRD 652
++ P +EQ+ V+++ S T S K +PND Q RD
Sbjct: 16 IKDSPKIKEQENTSTVNESDVLATSTTASSGVKRKRLPNDLVGQLRD 62
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +2
Query: 407 SRTSISCTWENQSNFYHSQ*---PFSWDEGRQNSRT*EVQ 517
++TSI+ T +NQS+ S PF+ DE RQNSR +++
Sbjct: 633 TQTSIT-TNDNQSSILTSSDQTSPFATDEDRQNSRNVQLE 671
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,195
Number of Sequences: 5004
Number of extensions: 67102
Number of successful extensions: 268
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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