Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021842
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    30   2.6  
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164...    29   3.5  
12_01_0393 - 3100230-3100714,3100973-3101097,3101271-3101399,310...    29   4.6  
08_01_0526 + 4575160-4576719                                           29   4.6  
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601...    28   8.1  

>12_01_1109 -
           11726818-11727719,11728225-11728394,11730407-11730483,
           11730559-11730645,11730730-11730816,11731887-11731991,
           11732133-11732168,11733636-11733754,11733862-11734067,
           11735854-11735906,11735986-11736153,11736507-11736591,
           11737845-11738023,11738939-11739070,11739209-11739295,
           11739920-11739972,11740820-11740892,11741791-11742442,
           11743165-11743229
          Length = 1111

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -1

Query: 538 LSSIRFLLDFSGSTVLSTFIPTKRSLRVVE 449
           L SI+  L+ SG  VLS+F+ TKRSL  V+
Sbjct: 419 LESIKESLNESGLEVLSSFVETKRSLDQVD 448


>08_01_0207 -
           1647168-1647251,1647583-1647726,1648176-1648287,
           1648392-1648573,1648649-1648780,1648900-1649856,
           1649949-1650734
          Length = 798

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 488 RQNSRT*EVQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKSA 616
           R+N R  E+++  D+R+ ++ RLV    + E   T  S++ SA
Sbjct: 145 RENPRVSELEKDLDSRKNEIDRLVRLKTSLEVEKTSLSEQLSA 187


>12_01_0393 -
           3100230-3100714,3100973-3101097,3101271-3101399,
           3102480-3102508
          Length = 255

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +1

Query: 103 ARCLSDKSKDNDGKPQV----IQDAKKKTVKNDPATEKIQELLKSMMAPP 240
           A CL ++    DG  QV    + D    T   DP   ++Q+     MAPP
Sbjct: 123 AMCLENQEGSKDGTEQVEFHGVPDPNMDTEPQDPEAAEMQDAADRNMAPP 172


>08_01_0526 + 4575160-4576719
          Length = 519

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 591 VGEASVVFALLTSLFTCCSLVSGFCWTSQVLLFCLPS 481
           VGE S  +A+L  LF  C  V+GF W+   L + +PS
Sbjct: 378 VGEMSRSYAILLVLF-ICMYVAGFAWSWGPLGWLVPS 413


>01_05_0013 -
           17156017-17157647,17157977-17158144,17160064-17160113,
           17160796-17160833,17161102-17161212
          Length = 665

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 841 STGSFSGNNWPEAVQLLNLALVSLGSPNIQFCSIVWFCCLEYTKWLTTKY 692
           STG ++GN + E     N  ++ L     Q+   V F  LEY  W  TKY
Sbjct: 335 STGGYTGNVYHE----FNDGIIPLYITARQYNKKVVFVMLEYHDWWMTKY 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,280,348
Number of Sequences: 37544
Number of extensions: 385012
Number of successful extensions: 1180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)