Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021842
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 35 0.063
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 35 0.063
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 35 0.063
AF016449-11|AAG23992.1| 353|Caenorhabditis elegans Serpentine r... 32 0.58
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 30 1.8
Z92789-2|CAB07219.1| 344|Caenorhabditis elegans Hypothetical pr... 29 4.1
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 29 5.4
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 29 5.4
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 29 5.4
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 29 5.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.2
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 9.5
AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine re... 28 9.5
AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 35.1 bits (77), Expect = 0.063
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +3
Query: 219 EKHDGTSKNK*SEYREKFATSPDTRRSKQADEIEVKTEKIEESITKAASDVAQAIGGDVK 398
EK+ T K + SE REK D + IE +K+EE+ +A A D
Sbjct: 617 EKNLETIKKE-SEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTT 675
Query: 399 -QTEAELLSRVLGKINQTSTTLSDLLVGMKVDRTVEPEKSNKNRILES 539
T+ LS + GK+ ++++ + +L V +V++ V E S K + +E+
Sbjct: 676 VSTKESELSELKGKLTESNSFIEELKV--QVEK-VSNEISEKQQEVEN 720
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 35.1 bits (77), Expect = 0.063
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +3
Query: 219 EKHDGTSKNK*SEYREKFATSPDTRRSKQADEIEVKTEKIEESITKAASDVAQAIGGDVK 398
EK+ T K + SE REK D + IE +K+EE+ +A A D
Sbjct: 619 EKNLETIKKE-SEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTT 677
Query: 399 -QTEAELLSRVLGKINQTSTTLSDLLVGMKVDRTVEPEKSNKNRILES 539
T+ LS + GK+ ++++ + +L V +V++ V E S K + +E+
Sbjct: 678 VSTKESELSELKGKLTESNSFIEELKV--QVEK-VSNEISEKQQEVEN 722
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 35.1 bits (77), Expect = 0.063
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +3
Query: 219 EKHDGTSKNK*SEYREKFATSPDTRRSKQADEIEVKTEKIEESITKAASDVAQAIGGDVK 398
EK+ T K + SE REK D + IE +K+EE+ +A A D
Sbjct: 619 EKNLETIKKE-SEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTT 677
Query: 399 -QTEAELLSRVLGKINQTSTTLSDLLVGMKVDRTVEPEKSNKNRILES 539
T+ LS + GK+ ++++ + +L V +V++ V E S K + +E+
Sbjct: 678 VSTKESELSELKGKLTESNSFIEELKV--QVEK-VSNEISEKQQEVEN 722
>AF016449-11|AAG23992.1| 353|Caenorhabditis elegans Serpentine
receptor, class t protein7 protein.
Length = 353
Score = 31.9 bits (69), Expect = 0.58
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 398 FDITPDSLSNITSSFCDALLYFFSLHFYFVRLFTSPSIWRCCEFFSVLASLIFGGAIM-L 222
F TPD++SNI C + LY + + + S SIW + +IF I+
Sbjct: 194 FVSTPDTISNIILIVCTSTLYLYLSYNLLFKFGYSTSIW----LYKTKRQIIFQAVILCA 249
Query: 221 FNSS*IFSVAGSF-FTVFFLAS 159
F++ VAG + F +FF AS
Sbjct: 250 FHA----VVAGIYEFMMFFYAS 267
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 252 SEYREKFATSPDTRRSKQADEIEVKTEKIEESITKAASDVAQAIGGDVKQTEAELLSRVL 431
++ REK T+ S+ AD + +IEE I K D+ + +G + K E+ L + +
Sbjct: 101 AKVREKLEDDVKTQTSQAADSKAKQVAEIEEKIAKNVDDI-EKLGNEGKIEESMKLHKYV 159
Query: 432 GKINQTSTTLSD 467
++ + + D
Sbjct: 160 EELREKIQEIED 171
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 79 FRKDLRVIARCLSDKSKDNDGKPQVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEAS 258
+RK L+ IAR K+ K D+K + + +D + +L S+ P K ++ S
Sbjct: 2451 YRKALKKIARKCRSIQKEKSKKVTKPDDSKPEVIPSDQKPK--SQLETSVALPSKSAKVS 2508
Query: 259 TEKNSQHLQIL 291
T+K+ + L L
Sbjct: 2509 TKKSEKDLSPL 2519
>Z92789-2|CAB07219.1| 344|Caenorhabditis elegans Hypothetical
protein H02I12.5 protein.
Length = 344
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 609 NQHMFPMTGQGKEETVTEVVLHKSQKLIYLVVSHLVYSRQQNQTMEQNWMFGEPKET 779
+Q F T + ++ V V+LH +Q+ Y + S + ++ + EPKET
Sbjct: 114 SQRWFNTTRESEKALVEHVLLHPNQRPHYFAAQCRMLSAEDISSLILTSLLAEPKET 170
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 148 QVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEASTEKNSQHLQIL 291
Q IQD++K ++ + ++ Q+ S P +I + ++N+QHLQ L
Sbjct: 264 QRIQDSEKVAIQQNQIKKEQQQ---SQPTPQQIHQQQAQQNAQHLQQL 308
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 148 QVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEASTEKNSQHLQIL 291
Q IQD++K ++ + ++ Q+ S P +I + ++N+QHLQ L
Sbjct: 776 QRIQDSEKVAIQQNQIKKEQQQ---SQPTPQQIHQQQAQQNAQHLQQL 820
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 148 QVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEASTEKNSQHLQIL 291
Q IQD++K ++ + ++ Q+ S P +I + ++N+QHLQ L
Sbjct: 779 QRIQDSEKVAIQQNQIKKEQQQ---SQPTPQQIHQQQAQQNAQHLQQL 823
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 148 QVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEASTEKNSQHLQIL 291
Q IQD++K ++ + ++ Q+ S P +I + ++N+QHLQ L
Sbjct: 779 QRIQDSEKVAIQQNQIKKEQQQ---SQPTPQQIHQQQAQQNAQHLQQL 823
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 76 KFRKDLRVIARCLSDKSKDNDGKPQVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEA 255
K KD + S ++ D K +V+ KKKT K+D + + E K+++ SE+
Sbjct: 13395 KLEKDEKSTKESESKETVDEKPKKKVL---KKKTEKSDSSISQKSETSKTVVESAGPSES 13451
Query: 256 STEK 267
T+K
Sbjct: 13452 ETQK 13455
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 76 KFRKDLRVIARCLSDKSKDNDGKPQVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEA 255
K KD + S ++ D K +V+ KKKT K+D + + E K+++ SE+
Sbjct: 13395 KLEKDEKSTKESESKETVDEKPKKKVL---KKKTEKSDSSISQKSETSKTVVESAGPSES 13451
Query: 256 STEK 267
T+K
Sbjct: 13452 ETQK 13455
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 488 RQNSRT*EVQQKPDTREQQVKRLVSKAKTTEASPTRYSQRKS-AYVPNDRTRQGRDSNRS 664
R+ SRT ++ ++ +R S++ + SP R S+R+S + P+ + R+++RS
Sbjct: 95 RRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREASRS 154
Query: 665 GTP 673
+P
Sbjct: 155 RSP 157
>AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine
receptor, class h protein83 protein.
Length = 352
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Frame = -2
Query: 213 FLNLFSSRIIFY----GFLLGILNYLRLP 139
FLN+ ++ +F+ GF +G+LN+LR+P
Sbjct: 70 FLNVLATPYLFFPTLSGFSVGLLNFLRVP 98
>AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical
protein F20H11.4 protein.
Length = 446
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 85 KDLRVIARCLSDKSKDNDGKPQVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEASTE 264
KDL+ + D K + K +V ++ KKK KN +K + M PP E + +
Sbjct: 49 KDLKEEKSKVPDDGKKQEDKKEVKKEEKKKDEKN----KKSKNRKSKMKPPPDTQELANK 104
Query: 265 K 267
K
Sbjct: 105 K 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,136,313
Number of Sequences: 27780
Number of extensions: 369996
Number of successful extensions: 1660
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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