Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021842
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 751 TGCLENLKKRELSLATAQPPANYFQK 828
           +GC  N+ + ++ +A +Q P N  +K
Sbjct: 855 SGCPSNMMELQVDIADSQQPLNLSKK 880


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 615 ADFRCEYLVGEASVVFALLTSLFTCCSLVSGFCWT 511
           +D +    VG    VF +    F C ++V+ +C T
Sbjct: 266 SDHKAAITVGVIMGVFLICWVPFFCVNIVTSYCKT 300


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  LTRLKFRKDLRVIARCLSDKSKDN 135
           LTR  + +D+R    C  +KS+D+
Sbjct: 402 LTRAAYSRDVRPKYDCTLEKSQDD 425


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  LTRLKFRKDLRVIARCLSDKSKDN 135
           LTR  + +D+R    C  +KS+D+
Sbjct: 402 LTRAAYSRDVRPKYDCTLEKSQDD 425


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  LTRLKFRKDLRVIARCLSDKSKDN 135
           LTR  + +D+R    C  +KS+D+
Sbjct: 402 LTRAAYSRDVRPKYDCTLEKSQDD 425


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 689 DIFGGEPLGIFKTTEPNY 742
           +I  GEPL +F  + PN+
Sbjct: 941 EISDGEPLYVFVRSAPNF 958


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,421
Number of Sequences: 438
Number of extensions: 4297
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)