Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021841
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    28   0.076
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 0.076
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = -3

Query: 760  LFFVCTVLITRQNLVLSLGFLICNASITRSGVLEVCKDILIIPTAPLYSVCFRLIPNLEL 581
            +F +C VL  ++N  L LG+LI  +++  + V+ +C   +   T    S    LI  +  
Sbjct: 891  IFALCVVLQLQENDWLQLGYLIFVSTLYTANVVCICH--VCYSTIQEVSKSGELIHKI-A 947

Query: 580  TEDREFSIHRLEAMFWQITN 521
            T D E  I ++E    QI N
Sbjct: 948  TNDHEI-IDKIEMFSLQILN 966


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 482 YQCSTMYIFR-RCNICDLPEH 541
           + C    +F  + NICD PEH
Sbjct: 502 FACRPGTVFHTQSNICDWPEH 522


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 456 LNGFQKNLLECCLDRIEQLQVD 391
           L   +KNL++ CL+  E+L  D
Sbjct: 398 LKVIRKNLVKKCLELFEELAED 419


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +2

Query: 422  QHSRRFFWNPLRKASWRSPI 481
            QHS   +W P  +  W   I
Sbjct: 1009 QHSLVVYWKPPAREEWNGDI 1028


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,599
Number of Sequences: 336
Number of extensions: 4123
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)