Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021841
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   1.0  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    27   2.4  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   4.2  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   5.5  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    26   5.5  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   7.3  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 INWIINFIYISWFLFSDSEVSSVFTQALSHSF 184
           ++WI    +  WFLFS++ V S+F   +  +F
Sbjct: 716 LSWIPGAFFTLWFLFSNNVVLSMFIAVIQVNF 747


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 271 PINPSLKNLSLSKIRADHYSDFIDDDLKLYIGSVNYPEIRIDLE 402
           P N +L   S SK+  DH S FID  +  + G V+  +   D E
Sbjct: 28  PPNETLFLESTSKLTQDHISSFIDFSVWDFPGQVDVFDAAFDFE 71


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 270 IINFIYISWFLFSDSEVSSVFTQALSHSF 184
           II+ I   WF + D++ S+  T  +SH F
Sbjct: 360 IISSIVSQWFFYRDTKSSATKTNLVSHFF 388


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 594 PILN*LRTENFLSTASKPCSGKSQILHRRKIYIVEHW*IGDLHDAFLNGFQK----NLLE 427
           P+     T NF+ T     S K   L ++ ++++ H   GD     L   +K     L+E
Sbjct: 459 PLREKFLTTNFIDTLISNISTKDSSLRKKTVWVLRHVVFGDDETIQLEPLKKIGASKLVE 518

Query: 426 CCLD 415
            C D
Sbjct: 519 LCND 522


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 597 ISLKHTEYRGAVGIISMSLQTSKTPERVIEALQIRNPRLRTR 722
           I L H +Y    G+ SMS   S+ P+R   A     P +  +
Sbjct: 118 IKLWHNDYSNVRGMESMSSLVSRLPQRQSSASHSEQPTINLK 159


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 440 FWNPLRKASWRSPIYQCSTMYIFRRCNI-CDLPEHGFEAVDRKFSV 574
           F  PL     R P+Y CS ++++   NI C LP +  + +   F +
Sbjct: 136 FLGPLSDIGGRKPVYFCS-IFVYTVFNISCALPRNIVQMIISHFII 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,719
Number of Sequences: 5004
Number of extensions: 74365
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)