Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021841
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308... 30 2.5
11_08_0084 + 28260647-28262575 29 5.8
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 29 5.8
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 29 5.8
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 5.8
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 29 5.8
11_06_0545 + 24839536-24843421,24843871-24844310 28 7.6
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 28 7.6
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 28 7.6
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 28 7.6
>03_01_0397 +
3086142-3086489,3087097-3087252,3088043-3088201,
3088305-3088388,3089266-3089348,3089486-3089531,
3089825-3089912,3090009-3090178,3090317-3090430,
3090497-3090604,3090987-3091202
Length = 523
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 558 IENSLSSVNSRLGISLKHTEYRGAVGIISMSLQTSKTPERVIEALQIR 701
+ L SVN + L+H +YR G+ + +++T + V++ L++R
Sbjct: 157 LAKKLKSVNE-FAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLR 203
>11_08_0084 + 28260647-28262575
Length = 642
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 271 PINPSLKNLSLSKIRADHYSDFIDDD 348
P+NP + L L K+R ++ DF+ D+
Sbjct: 593 PLNPQVVRLVLDKVRDKYHKDFVVDE 618
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 619 YSVCFRLIPNLELTEDREFSIHRLEAMFWQITNITPSKDIH 497
Y+ FR + LE+TE+ F+ AMF ++ N +P K ++
Sbjct: 71 YAKKFRAL-GLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVY 110
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 316 ADHYSDFIDDDLKLYIGSVNYPEIRIDL---ELFNTIKTTFEKILLESIEKGV 465
A YS+ D++KL I S N PE+ I++ ++K T + IE+G+
Sbjct: 340 AQLYSEKSSDEVKLTIKSFNIPELLIEIPENATVGSLKKTVSDAVTTIIERGL 392
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +1
Query: 136 RSHFRIQNNRPNPKISKGMRESL-RENRRNFRIGEKKPRNINKIYNPINPSLKNLSLSK- 309
R R + N+ + + +RE+L + RNF E P + + +P+NPSLK +S+
Sbjct: 1609 RFETREEVNQRMLSVERAVREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEW 1668
Query: 310 IRADHYSD--FIDDDLKLYIGSVNYPEI 387
+R + I L+ GSVN ++
Sbjct: 1669 MRPSDIAKEVSISSQPCLFSGSVNSSDV 1696
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 LKNLSLSKIRADHYSDFIDDDLKLYIGSVNYPEIR 390
LK L K +D +F+DDD K Y+ Y EIR
Sbjct: 190 LKVFKLIKFSSDVLIEFVDDDGKCYLEMSYYFEIR 224
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 340 DDDLKLYIGSVNYPEIRIDLELFNTIKTTFEK 435
D D+K+ S+N IR+ E +N K +FEK
Sbjct: 1173 DSDIKILCASINLRFIRLLRESYNQNKLSFEK 1204
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 504 SFDGVIFVICQNMASRRWIENSLSSVNSRLGISLKHTEYRGAVGIISMSLQTSKTPERVI 683
+ D F +++ S + L S + + L+H YR G+ + +++T + ++
Sbjct: 211 ALDDTPFTHVEDLKSLEVLATKLKSA-TEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIV 269
Query: 684 EALQIR 701
+ L++R
Sbjct: 270 DTLKLR 275
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 28.3 bits (60), Expect = 7.6
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Frame = -3
Query: 808 VMI*AEKLVDLQHYIRLFFVCTVLITRQNLVLSLGFLICNASITRSGVLEVCKDILII-- 635
+M+ +++ H I L C L T +L+ LG LI I + V K + I
Sbjct: 337 IMMPLGRILSRSHSIALSSSC--LSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGP 394
Query: 634 --PTAPLYSVCFRLIPNLELTEDREFSIHRLEAMFWQITNITPSKDIHRGTLVN 479
PLYS C L T+ R+ + H N+ IH TL++
Sbjct: 395 DIQNKPLYSFCVNLFHEYISTKVRDMASHGEYLPIPLNQNLLSQSCIHLKTLMD 448
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 313 RADHYSDFIDDDLKLYIGSVNYPEIRIDLELFNTIKTTFEKILLESIEKGVMEITNLPVF 492
RA +++F D DLKL+I P+ ++ E F+ + + F ++ + +++ N V
Sbjct: 196 RAHQFNEFCDYDLKLFIPGCTAPD--VEEETFSVVFSFFVDVVEDDTAIN-LQVVNYWVV 252
Query: 493 H 495
H
Sbjct: 253 H 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,193,687
Number of Sequences: 37544
Number of extensions: 410490
Number of successful extensions: 996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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