Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021841
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  33   0.21 
SB_13534| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)                 29   3.4  
SB_6758| Best HMM Match : Spectrin (HMM E-Value=0.00075)               29   5.9  
SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_16820| Best HMM Match : BRF1 (HMM E-Value=0.2)                      28   7.8  

>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -1

Query: 561  LSTASKPCSGKSQILHRRKIYIVEHW*IGDLHDAFLNGFQKNLLECCLD 415
            LS+ + PC G + +LH  KIY+     IG L D  ++G Q N  +C  D
Sbjct: 982  LSSLAYPCWGSALVLHADKIYL-----IGGLRDGVVSG-QVNCYDCARD 1024


>SB_13534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 175 KISKGMRESLRENRRNFRIGEKKPRNINKIYNPINPSLKNLSLSKIRADHYS--DFIDDD 348
           K SK + +SLR+ + N    +KK +NI      ++       L K+ A+H S   F+ D 
Sbjct: 65  KFSKYL-DSLRKEKNNLNAAKKKEKNITISTKVLSQPAPRCKLPKLDANHESVKTFVKDL 123

Query: 349 LKLYIG 366
            KL  G
Sbjct: 124 GKLECG 129


>SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
          Length = 367

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 751 VCTVLITRQNLVLSLGFLICNASITRSGVL 662
           VC V+ +R N+   +  L+C+ ++  +GVL
Sbjct: 52  VCVVIASRSNMKTKMNILLCSLAVADTGVL 81


>SB_6758| Best HMM Match : Spectrin (HMM E-Value=0.00075)
          Length = 183

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -2

Query: 527 HKYY-TVERYTSWNTG--KLVISMTPFSMDSKRI 435
           H+YY TV+ +TSW TG  K + +  P S +S+ +
Sbjct: 117 HRYYGTVDPFTSWLTGLDKKLANQEPVSCNSRTV 150


>SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 576 SVNSRLGISLKHTEYRGAVGIISMSLQ-TSKTPE 674
           +VNS   ++LK  EYR  + + S+SLQ  S+ PE
Sbjct: 115 AVNSHGNLALKKKEYRSQINMKSVSLQYISRPPE 148


>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 900

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 551 PRSHVLANHKYYTVERYTSWNTGKLVISMTPFSMDSKRI-FSNV 423
           P S +L    YYT+E  +SW++   ++ +TP   +  R  ++N+
Sbjct: 426 PISRLLTREMYYTIESRSSWDS---IVRLTPSLKEELRFWYTNI 466


>SB_16820| Best HMM Match : BRF1 (HMM E-Value=0.2)
          Length = 304

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 573 SSVNSRLGISLKHTEYRGAVGIISMSLQTSKTPE 674
           S+V +R+ + L  + ++GAVGI+     + K PE
Sbjct: 90  STVKNRIEVRLLDSLFKGAVGIVPSETDSVKRPE 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,354,340
Number of Sequences: 59808
Number of extensions: 513886
Number of successful extensions: 1323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)