Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021841
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    27   0.21 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.47 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 256 NKIYNPINPSLKNLSLSKIRADHYSDFI 339
           NK + P+N + K+L+L+  + ++YS ++
Sbjct: 440 NKTWLPVNENYKSLNLAAQKREYYSHYV 467


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 700 LICNASITRSGVLEVCKDILIIPTAPLYSVCFRLIP 593
           L+CN+ +  S ++     I++I    +Y+V  R IP
Sbjct: 806 LVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRKIP 841


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 694 CNASITRSGVLEVCKDILIIPTAPLYSV 611
           CN  +    V ++C  +L++P A LY +
Sbjct: 76  CNYLLVSLAVSDLCVALLVMPMALLYEI 103


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = +1

Query: 268 NPINPS--LKNLSLSKIRADHY---SD-FIDDDLKLYIGSVNY 378
           +P +PS    ++S + + +++Y   SD F+ DDL  YI  +NY
Sbjct: 92  SPSSPSSFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNY 134


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = +2

Query: 20  KIECWKYYSSVI 55
           ++EC+KYY +++
Sbjct: 320 QVECYKYYGNIM 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,234
Number of Sequences: 438
Number of extensions: 5141
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)