Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021841
(810 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44700.1 68418.m05477 leucine-rich repeat transmembrane prote... 33 0.17
At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family... 31 1.2
At3g16740.1 68416.m02137 F-box family protein contains F-box dom... 31 1.2
At4g32010.1 68417.m04557 transcriptional factor B3 family protei... 30 2.1
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 30 2.1
At1g53380.1 68414.m06051 expressed protein contains Pfam profile... 28 6.4
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 28 6.4
At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP... 28 8.4
At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP... 28 8.4
At4g08460.2 68417.m01397 expressed protein 28 8.4
At4g08460.1 68417.m01396 expressed protein 28 8.4
>At5g44700.1 68418.m05477 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1252
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 256 NKIYNPINPSLKNLSLSKIRADHYSDFIDDDLKLYIGS-VNYPEIRI-DLELFNTIKTTF 429
N++ PI +L NLS S +S+ + D+ +GS VN +++ D EL TI TF
Sbjct: 105 NRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETF 164
Query: 430 EKIL-LESIEKGVMEITNL 483
++ L+ + +T L
Sbjct: 165 GNLVNLQMLALASCRLTGL 183
>At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 259 KIYNPINPSLKNLSLSKIRADHYSDFIDDDLKLYIGSVNYPEI 387
++ +P N L N LS + +H + DD L L +G+ + P +
Sbjct: 53 RLPDPTNTLLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRL 95
>At3g16740.1 68416.m02137 F-box family protein contains F-box domain
Pfam:PF00646
Length = 391
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -3
Query: 571 REFSIHRLEAMFWQITNITPSKDI---HRG 491
REF I+ L + W++ N+TP D+ HRG
Sbjct: 180 REFEIYDLNSDSWKVVNVTPDWDVEFYHRG 209
>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
GI:7801376; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 780
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/104 (24%), Positives = 48/104 (46%)
Frame = +1
Query: 166 PNPKISKGMRESLRENRRNFRIGEKKPRNINKIYNPINPSLKNLSLSKIRADHYSDFIDD 345
P K+ G R++ G +P N+N N +NP +++ SK+ + D D
Sbjct: 375 PEGKLVMGYRKATNSTATQMFKGSSEP-NLNMFSNSLNPGCGDINWSKL--EKSEDMAKD 431
Query: 346 DLKLYIGSVNYPEIRIDLELFNTIKTTFEKILLESIEKGVMEIT 477
+L L S+ R+ I T +++L++S++ ++IT
Sbjct: 432 NLFLQ-SSLTSARKRV-----RNIGTKSKRLLIDSVDVLELKIT 469
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 151 IQNNRPNPK---ISK-GMRESLRENRRNFRIGEKKPRNINKI 264
+QN+RPNPK +S MR+ + E+RR+ I + R + ++
Sbjct: 13 VQNSRPNPKSPTVSPFSMRQKIAEHRRSLPIASVEKRLVEEV 54
>At1g53380.1 68414.m06051 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 453
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 190 MRESLRENRRNFRIGEKKPRNINKIYNPINPSLKNLSLSKIRADHYSDFIDDDLKLYIGS 369
+RE L E+ + ++ EK+ ++ NP L NL LS + H+ ++ +K G
Sbjct: 170 LREKLDESMKQNKLTEKRLNQSGQLCNP----LDNLHLSALNPTHFVTYLHHTVKSTRGF 225
Query: 370 V 372
V
Sbjct: 226 V 226
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 157 NNRPNPKISKGMRESLRENRRNFRIGEKKPRNINKIYNPINPSLKNLSLSKIRADHYSDF 336
N+ +PK S G S RE ++ K+P K YN K L+K+ H +DF
Sbjct: 270 NSNESPK-SNGTSSSGREEKKKV---SKQPER-KKNYNTDKIQRKGRDLTKLIYKHVADF 324
Query: 337 IDDDLK 354
++ + K
Sbjct: 325 VEPESK 330
>At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP1
isozyme 7 (TOPP7) identical to SP|O82733
Serine/threonine protein phosphatase PP1 isozyme 7 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 327
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 691 NASITRS-GVLEVCKDILIIPTAPLYSVCFRLIPNLELTEDREFSIHRLEAMFWQITNIT 515
+ASI R G + CK + +++ CF +P L ++R F +H + ++ ++
Sbjct: 123 SASINRIYGFYDECKRRFSVKIWRIFTDCFNCLPVAALIDERIFCMH--GGLSPELLSLR 180
Query: 514 PSKDIHRGT 488
+DI R T
Sbjct: 181 QIRDIRRPT 189
>At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP1
isozyme 7 (TOPP7) identical to SP|O82733
Serine/threonine protein phosphatase PP1 isozyme 7 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 331
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 691 NASITRS-GVLEVCKDILIIPTAPLYSVCFRLIPNLELTEDREFSIHRLEAMFWQITNIT 515
+ASI R G + CK + +++ CF +P L ++R F +H + ++ ++
Sbjct: 123 SASINRIYGFYDECKRRFSVKIWRIFTDCFNCLPVAALIDERIFCMH--GGLSPELLSLR 180
Query: 514 PSKDIHRGT 488
+DI R T
Sbjct: 181 QIRDIRRPT 189
>At4g08460.2 68417.m01397 expressed protein
Length = 274
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 41 YSSVIGKQRREFGLDPESLLIIKSPEFK-PTYEGHILEFRIIDRTQKYLKECERACVKTE 217
+S+ + + ++ + D +S K PE P G + + ++++ +KYL +R+C+ E
Sbjct: 82 FSNCLEQYKKAYAKDEKS---DKPPELLCPLCRGQVKGWTVVEKERKYLNSKKRSCMNDE 138
>At4g08460.1 68417.m01396 expressed protein
Length = 274
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 41 YSSVIGKQRREFGLDPESLLIIKSPEFK-PTYEGHILEFRIIDRTQKYLKECERACVKTE 217
+S+ + + ++ + D +S K PE P G + + ++++ +KYL +R+C+ E
Sbjct: 82 FSNCLEQYKKAYAKDEKS---DKPPELLCPLCRGQVKGWTVVEKERKYLNSKKRSCMNDE 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,210,563
Number of Sequences: 28952
Number of extensions: 366417
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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