Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021840X
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          29   0.44 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   2.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   4.1  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   5.4  

>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 300 NERTTHHDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRSQ 437
           +E +T  DLT+     T++ H H   E  ++++ +L+++ +   SQ
Sbjct: 141 HESSTSKDLTDEASENTIITHSHPESEPLEKIFRKLVEENSEMNSQ 186


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 447 SRGPETGSMWSASSAGSTPRH 385
           SR P   S W +SS+G  P H
Sbjct: 58  SRSPARDSRWKSSSSGFAPAH 78


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 151 CVSLCSLVTSPLSGFRVMPVGFSHHPRWRGCR 56
           CV +C+  ++P+  F  +    ++HP    CR
Sbjct: 78  CVDICNGCSTPICEFNAVSNSQANHPCCSNCR 109


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 74  RMMREPNWHYSKS*KRTRH-*RAKRNATSGLG 166
           +M+  P+ HY  S KR+RH  + K++  SG+G
Sbjct: 573 KMLEGPDSHYEPS-KRSRHWLKVKKDYLSGVG 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,937
Number of Sequences: 5004
Number of extensions: 24282
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)