Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021840X
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565... 30 0.75
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 29 1.7
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313 29 2.3
12_01_0312 + 2349696-2350424 27 5.3
02_05_0100 - 25821606-25822349 27 5.3
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 27 7.0
05_03_0096 + 8356109-8356231,8356291-8356605 27 7.0
03_06_0496 + 34328702-34329674,34329726-34330631,34330858-343310... 27 7.0
02_04_0225 - 21063445-21063636,21063726-21063911,21064052-210641... 27 7.0
11_06_0271 - 21804629-21805836,21805997-21806015 27 9.2
08_02_0562 + 18722730-18723236 27 9.2
04_04_1460 + 33764106-33764303,33764675-33766201 27 9.2
>08_02_0396 -
16654603-16655030,16655803-16655906,16655988-16656579,
16656820-16656993,16657105-16657309
Length = 500
Score = 30.3 bits (65), Expect = 0.75
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 285 GDLQPNERTTHHDLTE-VKCVYTVLMHCHSVPELRDEVYC 401
GD P E L E V+C+ TV+ + PEL D YC
Sbjct: 92 GDDAPVESIAEEVLEEPVQCLETVIENTQEQPELEDAAYC 131
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 333 VKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRSQA 440
++ V + H ELRDE++ Q+ KQT +N +A
Sbjct: 133 IELVAKLYKHTLKRSELRDELFAQISKQTRNNPDRA 168
>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
Length = 289
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 5 GGARCRSLR*STTGTYLATASPTRMMREP 91
G A SL STT TYLA++S R R P
Sbjct: 54 GAALAASLAWSTTSTYLASSSRRRRKRPP 82
>12_01_0312 + 2349696-2350424
Length = 242
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Frame = -2
Query: 88 FSHH--PRWRGCRQICPRGR 35
F HH W GC +CP GR
Sbjct: 209 FHHHCITEWLGCSNVCPLGR 228
>02_05_0100 - 25821606-25822349
Length = 247
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 438 PETGSMWSASSAGSTPRHGVRALSDNALGPCKHISLRS 325
P G W G P+HG +A +A+GP ++I+ R+
Sbjct: 108 PPRGHPWHE---GPHPQHGFQASRSSAVGPIRNIAKRA 142
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 303 ERTTHHDLTEVKCVYTVLM 359
+R +H DL +V C+YTVL+
Sbjct: 90 KRKSHGDLVDVFCLYTVLL 108
>05_03_0096 + 8356109-8356231,8356291-8356605
Length = 145
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 50 YLAT--ASPTRMMREPNWHYSKS*KR 121
YLAT A P EPNW+Y +S +R
Sbjct: 55 YLATCGAVPCTAAPEPNWYYKRSTRR 80
>03_06_0496 +
34328702-34329674,34329726-34330631,34330858-34331062,
34331152-34331348,34331434-34331492
Length = 779
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 103 VMPVGFSHH-PRWRGCRQICPRGRLPKRSTSC 11
V+P+G H P W+ C+ + GR+ + C
Sbjct: 16 VLPIGAQKHDPAWKHCQMVRSAGRVRLKCVYC 47
>02_04_0225 -
21063445-21063636,21063726-21063911,21064052-21064138,
21064589-21064648,21064984-21065052,21065684-21065837,
21066127-21066203,21066634-21066679,21067167-21067253,
21067653-21067799,21069042-21069304
Length = 455
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 357 MHCHSVPELRDEVYCQLMKQTTSNRS 434
+H H ELRDE C K+ S RS
Sbjct: 402 LHLHLSSELRDETLCPSWKERDSPRS 427
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 355 RTV*THFTSVRSWCVVRSFG 296
RT+ +RSWCV RSFG
Sbjct: 195 RTLALWHPGMRSWCVCRSFG 214
>08_02_0562 + 18722730-18723236
Length = 168
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PETGSMWSASSAGSTPRHGVRALSDNALGPCKHISLRS-GHGAW 310
PE + + G RHG R P +H+ RS G G W
Sbjct: 103 PEADTARGGADDGDGGRHGARRCHRWQRRPAQHVEARSAGGGGW 146
>04_04_1460 + 33764106-33764303,33764675-33766201
Length = 574
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 25 ASVIDHGDISGDSLSNEDDERTQLA 99
A DH D S S SNE DER + A
Sbjct: 129 ADQFDHDDASSGSSSNEADERRRRA 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,557
Number of Sequences: 37544
Number of extensions: 189324
Number of successful extensions: 524
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -