Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021840X
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   4e-07
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)                      33   0.11 
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              32   0.19 
SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)                 31   0.58 
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     28   4.1  
SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             27   9.5  

>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 29/65 (44%), Positives = 36/65 (55%)
 Frame = +3

Query: 255  ECFTCVRAYCGDLQPNERTTHHDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSNRS 434
            ECF  +  + GD+       H D TE+  VY +L  C     L DEVYCQL+KQ TSN+S
Sbjct: 1705 ECFHAIMRFMGDISMGRN--HKD-TEL--VYFLLKTCRENERLCDEVYCQLVKQVTSNKS 1759

Query: 435  QAPDS 449
               DS
Sbjct: 1760 ACEDS 1764


>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
          Length = 1030

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 375 PELRDEVYCQLMKQTTSNRSQAP 443
           PEL++E+YCQL+KQT+    + P
Sbjct: 883 PELQNEIYCQLVKQTSKQVHRGP 905


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 255  ECFTCVRAYCGDLQPNERTTHHDLTEVKCVYTVLMHCHSVPELRDE 392
            EC   ++A  G +QPNE        E  C Y  L+   + PE R++
Sbjct: 1269 ECSNLLQAMLGSVQPNEVEGEAGRQEAACPYDTLLSMTNTPEPREK 1314


>SB_14370| Best HMM Match : MyTH4 (HMM E-Value=9.3e-25)
          Length = 618

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 375 PELRDEVYCQLMKQTTSNRSQA 440
           PE+RDE+YCQL  Q   N  ++
Sbjct: 488 PEVRDEIYCQLCNQVWGNPKES 509


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 255  ECFTCVRAYCGDLQPNERTTHHDLTEVKCVYTVLMHCHSVPELRDEVYCQLMKQTTSN 428
            + F  +  Y GD     +TT     ++ C           P +RDE+Y Q+ KQTT N
Sbjct: 1028 DVFKLILGYMGDRPIRVKTTRDIALDI-CT-----RGWETPLIRDEIYLQICKQTTDN 1079


>SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 384 RDEVYCQLMKQTTSNRS 434
           RDE+YCQL KQ  +N S
Sbjct: 14  RDEIYCQLCKQLVNNPS 30


>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 258 CFTCVR--AYCGDLQPNERTTHHDLTEVKCVYTVLMHCHSVPELR 386
           C T +R     GDL+ N RT H  L  + C+Y V +   S P LR
Sbjct: 370 CVTVIRPVTMVGDLK-NGRTVH-SLARLLCLYRVTLRYVSPPSLR 412


>SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 9   AHDVDRFGNRPRGHIWRQPLQRG**ENPTGITRNPESGLVTKEQSETQRVDLESADRRRE 188
           A D DR   R  G   R+  Q G  +     ++N + G   +E+ +  R     +DRRR+
Sbjct: 148 ARDSDRDWQRGDGRPHREHRQEGREQESKRDSQNGDDGRPHREERQVGRDHRHESDRRRD 207

Query: 189 M 191
           +
Sbjct: 208 L 208


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 73  RWRGCRQICPRGRLPKRSTS 14
           R R C Q+CPRG    R TS
Sbjct: 440 RARNCTQLCPRGGCRMRCTS 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,677
Number of Sequences: 59808
Number of extensions: 229680
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)