Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021840X
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13530.2 68417.m02110 expressed protein predicted protein, Ar...    29   1.5  
At4g13530.1 68417.m02109 expressed protein predicted protein, Ar...    29   1.5  
At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    27   4.4  
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    27   7.7  
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    27   7.7  

>At4g13530.2 68417.m02110 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 269

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 87  NPTGITRNPESGLVTKEQSETQRVDLESADRRRE 188
           N  GI RN E G+V   +S  Q +DL S+D R+E
Sbjct: 107 NEMGIERN-EVGIVEYSESIAQDMDLISSDERKE 139


>At4g13530.1 68417.m02109 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 270

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 87  NPTGITRNPESGLVTKEQSETQRVDLESADRRRE 188
           N  GI RN E G+V   +S  Q +DL S+D R+E
Sbjct: 107 NEMGIERN-EVGIVEYSESIAQDMDLISSDERKE 139


>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 123 LVTKEQSETQRVDLESADRRREM 191
           L+ K    T+R+DLE+ ++RREM
Sbjct: 400 LLKKATFSTKRIDLENLEKRREM 422


>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1260

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 261 FTCVRAYCGDLQPNERTTHHDLTE-VKCVYTVLMHCHSVPELRDEVYCQLMKQTTSN 428
           F  +  Y G +  ++R+T   L E +  V  +        ELRDE++ Q+ KQT  N
Sbjct: 139 FHLILKYMG-VDSSDRSTPPSLDERIDLVGKLFKKTLKRVELRDELFAQISKQTRHN 194


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1259

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 261 FTCVRAYCGDLQPNERTTHHDLTE-VKCVYTVLMHCHSVPELRDEVYCQLMKQTTSN 428
           F  +  Y G +  ++R+T   L E +  V  +        ELRDE++ Q+ KQT  N
Sbjct: 139 FHLILKYMG-VDSSDRSTPPSLDERIDLVGKLFKKTLKRVELRDELFAQISKQTRHN 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,848,015
Number of Sequences: 28952
Number of extensions: 140052
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)