Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021837
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   7e-10
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 55.2 bits (127), Expect = 7e-10
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = +1

Query: 346 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+A
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMA 238



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +2

Query: 515 SQTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHT 682
           +QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 683 SYVRNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKG 808
           S ++    +GG     Q   L  G  + +      L F+EKG
Sbjct: 300 SILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKG 341



 Score = 31.5 bits (68), Expect = 0.010
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 742 LGEGSRNVIATPGRLIDFLGKGHNQLTAV 828
           L  G   ++ATPGRL+DF+ KG  + ++V
Sbjct: 320 LSAGCHILVATPGRLLDFVEKGRVKFSSV 348


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 575 YLCAQLLARCRPTFCRNPFGYATKFFPDI--AIGQ 477
           Y   +L A   P  CR   G  TK  PDI  AIGQ
Sbjct: 11  YCTWELNATNSPHTCRTKNGDYTKIMPDILTAIGQ 45


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 735 PGTWRGE*KCHCYSR*IN*FSWKRA 809
           PG W  E K  CY   IN   W  A
Sbjct: 490 PGKWPHEDKRGCYQLAINHIRWNSA 514


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 735 PGTWRGE*KCHCYSR*IN*FSWKRA 809
           PG W  E K  CY   IN   W  A
Sbjct: 580 PGKWPHEDKRGCYQLAINHIRWNSA 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,233
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)