Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021837
(831 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 127 1e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 118 4e-27
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 118 4e-27
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 89 3e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 89 3e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 89 3e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 89 4e-18
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 86 3e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 85 4e-17
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 85 4e-17
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 83 3e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 75 6e-14
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 73 2e-13
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 71 9e-13
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 66 2e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 66 2e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 66 3e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 65 5e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 63 3e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 59 4e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 59 4e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 59 4e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 57 1e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 56 3e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 56 3e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 55 5e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 55 5e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 6e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 3e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 48 1e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 47 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 5e-05
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 45 5e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 45 5e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 45 7e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 44 9e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 9e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 4e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 5e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 42 5e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 42 5e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 9e-04
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 41 0.001
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 41 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.002
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 40 0.002
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 40 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.011
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 38 0.011
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 36 0.033
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.058
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 33 0.18
At2g25460.1 68415.m03049 expressed protein 30 1.6
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 2.9
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 2.9
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 2.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.6
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 6.6
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 6.6
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat... 28 8.7
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 8.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 8.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 8.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 127 bits (306), Expect = 1e-29
Identities = 58/104 (55%), Positives = 77/104 (74%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIK 202
Query: 695 NTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQR 826
TC++GG PK Q RDL++GVE+ + + +E TNL+R
Sbjct: 203 TTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRR 246
Score = 101 bits (243), Expect = 4e-22
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLV 510
G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 742 LGEGSRNVIATPGRLIDFLGKGHNQLTAV 828
L +G VIATPGRLID + + L V
Sbjct: 219 LQKGVEIVIATPGRLIDMMESNNTNLRRV 247
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 118 bits (285), Expect = 4e-27
Identities = 58/104 (55%), Positives = 76/104 (73%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 695 NTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQR 826
+TC++GGAPK Q RDL RGVE+ + + LE TNL+R
Sbjct: 269 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKR 312
Score = 94.3 bits (224), Expect = 9e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 742 LGEGSRNVIATPGRLIDFLGKGHNQLTAV 828
L G VIATPGRLID L H L V
Sbjct: 285 LRRGVEIVIATPGRLIDMLECQHTNLKRV 313
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 118 bits (285), Expect = 4e-27
Identities = 58/104 (55%), Positives = 76/104 (73%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 695 NTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQR 826
+TC++GGAPK Q RDL RGVE+ + + LE TNL+R
Sbjct: 269 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKR 312
Score = 94.3 bits (224), Expect = 9e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 742 LGEGSRNVIATPGRLIDFLGKGHNQLTAV 828
L G VIATPGRLID L H L V
Sbjct: 285 LRRGVEIVIATPGRLIDMLECQHTNLKRV 313
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 89.0 bits (211), Expect = 3e-18
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
TC++GGAPK Q RDLERG ++
Sbjct: 261 CTCLYGGAPKGPQLRDLERGADI 283
Score = 77.8 bits (183), Expect = 8e-15
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVS 642
QAQ WPIAM G+++VA G + +G +L H R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 643 TTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRNVIATPGRLIDFL 798
T +F + I C+ C++ + K L G+ V+ATPGRL D L
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 89.0 bits (211), Expect = 3e-18
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
TC++GGAPK Q RDLERG ++
Sbjct: 261 CTCLYGGAPKGPQLRDLERGADI 283
Score = 77.8 bits (183), Expect = 8e-15
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVS 642
QAQ WPIAM G+++VA G + +G +L H R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 643 TTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRNVIATPGRLIDFL 798
T +F + I C+ C++ + K L G+ V+ATPGRL D L
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 89.0 bits (211), Expect = 3e-18
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
TC++GGAPK Q RDLERG ++
Sbjct: 261 CTCLYGGAPKGPQLRDLERGADI 283
Score = 77.8 bits (183), Expect = 8e-15
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Frame = +1
Query: 286 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 465
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 466 QAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASNCAHK*PTAYSER*WSDCFGLGAYQRVS 642
QAQ WPIAM G+++VA G + +G +L H R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 643 TTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRNVIATPGRLIDFL 798
T +F + I C+ C++ + K L G+ V+ATPGRL D L
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 88.6 bits (210), Expect = 4e-18
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIR 632
Query: 695 NTCVFGGAPKREQARDLERGVEMSLLL---QVD*LIFLEKGTTNLQR 826
V+GG+ +Q +L+RG E+ + +D L TNL+R
Sbjct: 633 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRR 679
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/83 (49%), Positives = 58/83 (69%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
TC++GGAPK Q ++LERG ++
Sbjct: 538 CTCLYGGAPKGPQLKELERGADI 560
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +1
Query: 268 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 436 TMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 85.4 bits (202), Expect = 4e-17
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGII 499
Query: 695 NTCVFGGAPKREQARDLERGVEMSLLL---QVD*LIFLEKGTTNLQR 826
V+GG+ +Q +L+RG E+ + +D L TNL+R
Sbjct: 500 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRR 546
Score = 64.5 bits (150), Expect = 8e-11
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLR 331
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
+ V+GG K EQ ++L+ G E+
Sbjct: 332 VSAVYGGMSKHEQFKELKAGCEI 354
Score = 72.9 bits (171), Expect = 2e-13
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 82.6 bits (195), Expect = 3e-16
Identities = 40/83 (48%), Positives = 56/83 (67%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 273 AKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKIS 331
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
C++GGAPK Q +++ERGV++
Sbjct: 332 CACLYGGAPKGPQLKEIERGVDI 354
Score = 41.1 bits (92), Expect = 9e-04
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA-*PNGFRQNVGLHLASNCAHK*PTAYSER*WS 606
V + G+ P+PIQAQ WPIAM +++VA G + +G +L H R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG-YLIPGFMHLQRIHNDSRMGP 302
Query: 607 DCFGLGAYQRVSTTNSASCCRFW--THILCS*HVCVWWCS*KRASPGLGEGSRN---VIA 771
L + ++T +F + I C+ C++ + K P L E R V+A
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCA---CLYGGAPK--GPQLKEIERGVDIVVA 357
Query: 772 TPGRLIDFL 798
TPGRL D L
Sbjct: 358 TPGRLNDIL 366
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 74.9 bits (176), Expect = 6e-14
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTS 685
++TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL 416
Query: 686 YVRNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQRC 829
R T + GG EQ + +G E+ + + LE+ L +C
Sbjct: 417 GFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQC 464
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 72.9 bits (171), Expect = 2e-13
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSY 249
Query: 680 TSYVRNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQ 823
+ V+ +GG P +Q R+LERGV++ + LE+G +LQ
Sbjct: 250 QTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQ 297
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLVA 513
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 70.9 bits (166), Expect = 9e-13
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSY 262
Query: 680 TSYVRNTCVFGGAPKREQARDLERGVEM 763
+ V+ +GG P +Q R+LERGV++
Sbjct: 263 QTGVKVVVAYGGTPINQQLRELERGVDI 290
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 432
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 433 KTMGYKEPTPIQAQGWPIAMSGKNLVA 513
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 680 TSYVRNTCVFGGAPKREQARDLERGVEM 763
+ V+ +GG P +Q R+LERG ++
Sbjct: 255 QTGVKVVVAYGGTPIHQQLRELERGCDI 282
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
+QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 680 TSYVRNTCVFGGAPKREQARDLERGVEM 763
+ V+ +GG P +Q R+LERG ++
Sbjct: 255 QTGVKVVVAYGGTPIHQQLRELERGCDI 282
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 682
++TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 158 AKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEP 217
Query: 683 SYVRNTCVFGGAPKREQARDLERGVEM 763
+++ CV+GG+ K Q + GV++
Sbjct: 218 CGLKSICVYGGSSKGPQISAIRSGVDI 244
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 492
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 493 SGKNLV 510
G++L+
Sbjct: 150 DGRDLI 155
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.3 bits (152), Expect = 5e-11
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
R++TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 689 VRNT-CVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNL 820
+T C++GG P +Q R L+ GV++++ + +++G NL
Sbjct: 204 SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNL 248
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 62.9 bits (146), Expect = 3e-10
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
R++TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 689 VRNT-CVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNL 820
+T C++GG P +Q R+L G+++++ + +++G NL
Sbjct: 216 SLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNL 260
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 676
R++TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 677 HTSYVRNTCVFGGAPKREQARDLERGVEM 763
+ + + C++GG Q L+RGV++
Sbjct: 199 GSLGLSSCCLYGGDSYPVQEGKLKRGVDI 227
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.8 bits (136), Expect = 4e-09
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 679
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 680 TSY--VRNTCVFGGAPKREQARDLERGVEM 763
Y +R+ GG R Q +++GV +
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQLDVVKKGVHI 232
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +1
Query: 244 GFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 423
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 424 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 58.8 bits (136), Expect = 4e-09
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 679
S TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 680 TSYVRNTCVFGGAPKREQARDLERGVEM 763
+ R+ V GG+ R Q L ++M
Sbjct: 215 HARFRSILVSGGSRIRPQEDSLNNAIDM 242
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 679
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q ++Q A
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVE 251
Query: 680 TSY--VRNTCVFGGAPKREQARDLERGVEM 763
Y +R+ GG R Q ++RGV +
Sbjct: 252 AGYPPLRSLLCIGGIDMRSQLEVVKRGVHI 281
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/77 (29%), Positives = 44/77 (57%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 460 PIQAQGWPIAMSGKNLV 510
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 676
R++TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 677 HTSYVRNTCVFGGAPKREQARDLERGVEM 763
Y+ CV+GG Q L RGV++
Sbjct: 203 SAPYLSTVCVYGGVSYTIQQSALTRGVDV 231
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 694
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
V GG K ++ L +G+ +
Sbjct: 136 PGYVMGGEKKAKEKARLRKGISI 158
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPIAMSGKN-LVA*PNG 525
MG++ PT +QAQ P+ +SG++ LV P G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTG 77
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 685
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 154 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 213
Query: 686 YVRNTCVFGGAPKREQARDLERGVEM 763
+ V GG P Q +++GVE+
Sbjct: 214 PFKTALVVGGDPMSGQLYRIQQGVEL 239
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 484 IAMSGKNLVA 513
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 685
+ TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 17 ADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGL 76
Query: 686 YVRNTCVFGGAPKREQARDLERGVEM 763
+ V GG P Q +++GVE+
Sbjct: 77 PFKTALVVGGDPMSGQLYRIQQGVEL 102
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/83 (32%), Positives = 50/83 (60%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
++TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Query: 695 NTCVFGGAPKREQARDLERGVEM 763
+ + GG +Q +L +G ++
Sbjct: 129 VSLLVGGDSMEDQFEELTKGPDV 151
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Frame = +2
Query: 518 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 685
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 686 Y-VRNTCVFGGAPKREQARDLERGVEM 763
R+ V GG +R Q +LE+GV++
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLEQGVDV 505
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
++TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 133 ARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQ 190
Query: 692 RNTCVFGGAPKREQARDLERG 754
+ V GG +R +A+ + G
Sbjct: 191 TVSMVIGGNNRRSEAQRIASG 211
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 742 LGEGSRNVIATPGRLIDFL 798
+ GS VIATPGRL+D L
Sbjct: 208 IASGSNLVIATPGRLLDHL 226
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSY 688
++TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA + H+
Sbjct: 198 ARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQT 256
Query: 689 VRNTCVFGGAPKREQARDLERGVEM 763
V V GG ++ +A L +GV +
Sbjct: 257 VGK--VIGGEKRKTEAEILAKGVNL 279
Score = 31.9 bits (69), Expect = 0.54
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 439 MGYKEPTPIQAQGWPIAMSGKNLV 510
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/85 (36%), Positives = 43/85 (50%)
Frame = +2
Query: 479 GR*LCLERI*WRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 658
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 659 VAADFGHTSYVRNTCVFGGAPKREQ 733
+ + + ++ + GG REQ
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 352 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 688
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 689 VRNTCVFGGAPKREQARDLE 748
V + + GG LE
Sbjct: 120 VNSVLLVGGREVEADMNTLE 139
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 649
+++TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 652
R++TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 35.5 bits (78), Expect = 0.044
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 498
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 499 KNLVA 513
K++VA
Sbjct: 84 KDVVA 88
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEM 763
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHV 162
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEM 763
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHV 160
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/77 (38%), Positives = 40/77 (51%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
+QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 102 AQTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLR 156
Query: 695 NTCVFGGAPKREQARDL 745
+ + GG Q L
Sbjct: 157 CSVIVGGMDMLTQTMSL 173
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEM 763
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 160
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 501
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 502 NLVA 513
A
Sbjct: 180 ECFA 183
Score = 36.7 bits (81), Expect = 0.019
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 649
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 649
+++TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 649
+++TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 688
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 689 VRNTCVFGGAPKREQARDLE 748
V + + GG + + +E
Sbjct: 120 VNSVLLVGGREVKADMKIIE 139
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/106 (26%), Positives = 50/106 (47%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 692 RNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQRC 829
+ GG ++ L + V + + L +KG L+ C
Sbjct: 229 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDC 274
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + G+ G++ P+PIQ + PIA++G++++A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/106 (26%), Positives = 50/106 (47%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 692 RNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQRC 829
+ GG ++ L + V + + L +KG L+ C
Sbjct: 229 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDC 274
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + G+ G++ P+PIQ + PIA++G++++A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.1 bits (92), Expect = 9e-04
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +2
Query: 488 LCLERI*WRSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 667
LC I ++TGSGKTLA+++P + ++ + DG ++++PTRELA Q V
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQTFGVLN 164
Query: 668 DFGHTSYVRNTCVFGGAPKREQARDLERGVEMSLLL 775
G + GG + + ER EM++L+
Sbjct: 165 KVGKFHKFSAGLLIGGREGVDVEK--ERVHEMNILV 198
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 692 RNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQRC 829
+ GG R+ L + V + + L +KG L+ C
Sbjct: 222 QVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDC 267
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 692 RNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQRC 829
+ GG R+ L + V + + L +KG L+ C
Sbjct: 222 QVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDC 267
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 652
+++TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADF 673
+QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 53 AQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL 112
Query: 674 GHTSYVRNTCVFGGAPKREQ 733
G +R + GG + +Q
Sbjct: 113 GADISLRCAVLVGGIDRMQQ 132
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 661
S TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
R++ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 692 RNTCVFGGAPKREQARDLERGVEMSLLLQVD*LIFLEKGTTNLQRC 829
GG R+ L + V + + L +KG L+ C
Sbjct: 252 EVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDC 297
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 513
FE+ + +G+ G+++P+PIQ + PIA++G +++A
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 39.9 bits (89), Expect = 0.002
Identities = 36/150 (24%), Positives = 58/150 (38%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLAS 558
PI+ F++ D V +GV GYK+P+ IQ + + G++++A + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 559 NCAHK*PTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 738
C S R L + +++ + H H C+ S
Sbjct: 80 VCQ---IVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135
Query: 739 GLGEGSRNVIATPGRLIDFLGKGHNQLTAV 828
L G V TPGR+ D + +G Q AV
Sbjct: 136 KLERGVHAVSGTPGRVYDMIKRGSLQTKAV 165
Score = 39.5 bits (88), Expect = 0.003
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = +2
Query: 512 RSQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 682
++Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 683 SYVRNTCVFGGAPKREQARDLERGV 757
+ + C+ GG E + LERGV
Sbjct: 118 NIQAHACI-GGKSIGEDIKKLERGV 141
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 652
+++TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
+QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEM 763
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHV 156
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 35.9 bits (79), Expect = 0.033
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 664
+S TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212
Query: 665 ADFGHTSYVRNTCVFGGAPKREQARDLER 751
G + GGA + Q L++
Sbjct: 213 KLLGPVHRRMVQQLVGGANRMRQEEALKK 241
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 510
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.5 bits (73), Expect = 0.18
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Frame = +2
Query: 515 SQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQ 649
++TGSGKTLA+ LP + + + DG + AL++ PTRELA Q
Sbjct: 235 AETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQ 294
Query: 650 IQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEM 763
+ + + V+ + GG +Q R L+ E+
Sbjct: 295 VTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEI 332
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 200 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 84
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
++++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 651 ICCANSLVGAKTKAIGPSPLRI 586
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 271 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 426
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 227
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWPIAMSGKNLVA*PNGFRQNVGLHLASNC 564
+K P P+ ++ + + + P G+R+NVG+ L S C
Sbjct: 30 LKQFSVSSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPC 74
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 457 TPIQAQGWPIAMS 495
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 457 TPIQAQGWPIAMS 495
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 280 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 456
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 457 TPIQAQGWPIAMS 495
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,165,758
Number of Sequences: 28952
Number of extensions: 402595
Number of successful extensions: 1322
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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