Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021836
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    56   3e-10
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   3.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 56.0 bits (129), Expect = 3e-10
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +1

Query: 505 SCVAQTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADF 672
           SC AQTGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI      F
Sbjct: 200 SC-AQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKF 258

Query: 673 GHTSYVRNTCVFGGAPKREQARDLERGVEI 762
            + S V+   ++GG     Q   +  G  I
Sbjct: 259 AYNSTVKVAVIYGGTSTNHQRGRILGGCHI 288



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +2

Query: 344 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L++
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMS 200



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 750 GSRNIIATPGRLIDFL 797
           G   ++ATPGRL DF+
Sbjct: 285 GCHILVATPGRLKDFV 300


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL  +MK+N  LG AC  +  I
Sbjct: 173 LLVDYMKKNKTLGAACGRIHPI 194


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL  +MK+N  LG AC  +  I
Sbjct: 487 LLVDYMKKNKTLGAACGRIHPI 508


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL  +MK+N  LG AC  +  I
Sbjct: 720 LLVDYMKKNKTLGAACGRIHPI 741


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL  +MK+N  LG AC  +  I
Sbjct: 720 LLVDYMKKNKTLGAACGRIHPI 741


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL   MK+N NLG AC  +  +
Sbjct: 747 LLIDLMKKNRNLGAACGRIHPV 768


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL   MK+N NLG AC  +  +
Sbjct: 747 LLIDLMKKNRNLGAACGRIHPV 768


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL   MK+N NLG AC  +  +
Sbjct: 747 LLIDLMKKNRNLGAACGRIHPV 768


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 270 LLKGWMKQNPNLGDACSDLQRI 205
           LL   MK+N NLG AC  +  +
Sbjct: 747 LLIDLMKKNRNLGAACGRIHPV 768


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,950
Number of Sequences: 336
Number of extensions: 4141
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)