Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021836
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 120 2e-28
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 93 3e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 6e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 60 4e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 57 3e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 57 3e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 4e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 7e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 52 1e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 50 5e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 9e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 9e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 2e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 8e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 2e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 42 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 1e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 40 3e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 3e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 39 7e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.007
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.062
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.062
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.4
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 7.2
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 7.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 120 bits (289), Expect = 2e-28
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +
Sbjct: 165 ISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRI 224
Query: 691 RNTCVFGGAPKREQARDLERGVEISL 768
RNTCV+GG P+ Q RDL RGVEI +
Sbjct: 225 RNTCVYGGVPRGPQIRDLIRGVEICI 250
Score = 99.1 bits (236), Expect = 6e-22
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 260 PFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 439
PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 440 GYKEPTPIQAQGWPIAMSGKNLV 508
G++ PTPIQ Q WP+AMSG+++V
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMV 163
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.5 bits (222), Expect = 3e-20
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
VA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +
Sbjct: 461 VAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNI 520
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
R C +GGAP ++Q DL+RG EI
Sbjct: 521 RACCAYGGAPIKDQIADLKRGAEI 544
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLV 508
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.5 bits (170), Expect = 6e-14
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAA 666
K+ +A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 667 DFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
F R V GG EQ+ + +G I
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHI 378
Score = 45.6 bits (103), Expect = 8e-06
Identities = 17/59 (28%), Positives = 37/59 (62%)
Frame = +2
Query: 332 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 741 LGEGSRNIIATPGRLIDFLE 800
+ +G+ ++ATPGRL+D LE
Sbjct: 372 MSQGAHIVVATPGRLLDCLE 391
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 60.1 bits (139), Expect = 4e-10
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH--- 678
AQTGSGKTLAY+LP + + P R G A+++APTREL QQI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 679 TSYVRNTCVFGGAPKREQARDLERGVEI 762
+ ++ + V GG K+ + + +GV I
Sbjct: 245 SHWIVSCNVIGGEKKKSEKARIRKGVNI 272
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 57.2 bits (132), Expect = 3e-09
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 636
++ AQTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 637 LAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
L QI + + F + S+VR V+GGA R Q R +++G ++
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDL 308
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.2 bits (132), Expect = 3e-09
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + +
Sbjct: 208 IAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNL 265
Query: 691 RNTCVFGGAPKREQAR 738
+ V+GGAPK EQAR
Sbjct: 266 KAVVVYGGAPKSEQAR 281
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 377 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
PI F+E + +++G+K YKEPTPIQA WP ++G+++V
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVV 206
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +
Sbjct: 112 MARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDL 168
Query: 691 RNTCVFGGAPKREQ 732
R+ + GG EQ
Sbjct: 169 RSVAIVGGVSLEEQ 182
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ + + + G+K PTPIQ + P+ + G+++V
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 53.2 bits (122), Expect = 4e-08
Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 687
+AQTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G +
Sbjct: 89 LAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIG 142
Query: 688 VRNTCVFGGAPKREQARDLER 750
VR+ + GG QA L +
Sbjct: 143 VRSVVIVGGMDMVTQAVALSK 163
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.4 bits (120), Expect = 7e-08
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 687
A+TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHH 189
Query: 688 VRNTCVFGGAPKREQARDLERGVEI 762
V GGA +R +A L +GV +
Sbjct: 190 QTFGIVIGGANRRAEADKLVKGVNL 214
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 693
A+TGSGKT A+ LP I + P G AL+L PTRELA QI + A G ++
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLK 105
Query: 694 NTCVFGGAPKREQARDLER 750
+ + GG Q+ DL +
Sbjct: 106 HALIVGGMDMIRQSIDLSK 124
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 49.6 bits (113), Expect = 5e-07
Identities = 33/108 (30%), Positives = 51/108 (47%)
Frame = +1
Query: 439 GLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 618
G +R A + ++ AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 619 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
LAPTRELAQQIQ+V G V GG R+ L+ GV +
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 660
K+ A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 359 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.8 bits (111), Expect = 9e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 693
A+TG+GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 694 NTCVFGGAPKREQARDLERG 753
+ GG K + + RG
Sbjct: 143 VSYAIGGNSKMREENAIRRG 162
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.0 bits (109), Expect = 2e-06
Identities = 30/79 (37%), Positives = 42/79 (53%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 693
A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFS 141
Query: 694 NTCVFGGAPKREQARDLER 750
+ GG +E+ L R
Sbjct: 142 AGLIIGGNNYKEEKERLSR 160
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/58 (46%), Positives = 34/58 (58%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 669
K+ A TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.020
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 45.6 bits (103), Expect = 8e-06
Identities = 28/89 (31%), Positives = 44/89 (49%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
K+ A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 676 HTSYVRNTCVFGGAPKREQARDLERGVEI 762
+ + GG + Q ++L + +I
Sbjct: 355 SFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
Score = 32.7 bits (71), Expect = 0.062
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ N + +G+ +G++ PT IQ + P+A+ GK++V
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.4 bits (100), Expect = 2e-05
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHTSY 687
A TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q +
Sbjct: 166 ADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPN 220
Query: 688 VRNTCVFGGAPKREQARDLER 750
+R + GG ++Q R L +
Sbjct: 221 IRVMSITGGLAVQKQQRLLNK 241
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/108 (25%), Positives = 47/108 (43%)
Frame = +1
Query: 439 GLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 618
G +R + + ++ A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 619 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
L PTRELA Q QV G V+ GG R+ L V I
Sbjct: 118 LVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*LKRVPAK 535
FE+ + G+ G++ P+PIQ + PIA+SG++++A K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 663
++ A TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.3 bits (90), Expect = 3e-04
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
D+G + + S + + C A++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 613 -LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 714
LVL TRELA QI+ A F + VR +GG
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 693
+Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 160 SQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 39.1 bits (87), Expect = 7e-04
Identities = 30/108 (27%), Positives = 47/108 (43%)
Frame = +1
Query: 439 GLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 618
G + A S + ++ AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 619 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
L+PTRELA QIQ V G V+ GG + L+ G +
Sbjct: 95 LSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHV 142
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 323 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 502
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 503 LVA 511
++A
Sbjct: 61 VIA 63
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.9 bits (79), Expect = 0.007
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +1
Query: 508 CV-AQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 651
CV A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 177 CVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.062
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.062
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 604 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 747
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 645
K+ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +3
Query: 522 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 674
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNP 379
G+ F++ N ++YD +LK+ + E +R N +V EV NP
Sbjct: 336 GWSFVKD-NNDYYDNAARILKQMFHVAERHRRNRVPSVQ--EVLNP 378
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 440 PLSLHLVAHNQENL--LLQSIE 381
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,593
Number of Sequences: 5004
Number of extensions: 67072
Number of successful extensions: 235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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