Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021836
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 124 5e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 118 5e-27
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 118 5e-27
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 93 1e-19
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 93 1e-19
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 93 1e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 92 5e-19
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 90 1e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 89 3e-18
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 89 4e-18
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 87 1e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 77 1e-14
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 74 1e-13
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 73 2e-13
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 70 2e-12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 70 2e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 70 2e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 64 1e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 2e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 62 4e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 60 2e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 59 3e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 58 5e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 57 2e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 57 2e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 56 3e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 1e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 51 8e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 50 1e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 50 2e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 50 2e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 49 3e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 7e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 1e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 46 2e-05
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 46 2e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 4e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 45 5e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 45 5e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 9e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 1e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 44 2e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 43 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 43 2e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 42 5e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 42 5e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 6e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 41 8e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.003
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.004
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 39 0.004
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 39 0.004
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.008
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 38 0.008
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 36 0.024
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 36 0.041
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 36 0.041
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.096
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 33 0.22
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.67
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.3
At2g33420.1 68415.m04096 expressed protein 28 6.3
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 28 6.3
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 124 bits (300), Expect = 5e-29
Identities = 55/84 (65%), Positives = 69/84 (82%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S +
Sbjct: 142 IAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKI 201
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
+ TC++GG PK Q RDL++GVEI
Sbjct: 202 KTTCIYGGVPKGPQVRDLQKGVEI 225
Score = 101 bits (242), Expect = 6e-22
Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +2
Query: 230 SPR-LGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 406
SPR L + PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 407 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 741 LGEGSRNIIATPGRLIDFLE 800
L +G +IATPGRLID +E
Sbjct: 219 LQKGVEIVIATPGRLIDMME 238
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 118 bits (284), Expect = 5e-27
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S V
Sbjct: 208 IAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGV 267
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
R+TC++GGAPK Q RDL RGVEI
Sbjct: 268 RSTCIYGGAPKGPQIRDLRRGVEI 291
Score = 93.1 bits (221), Expect = 2e-19
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 412
P+ F + F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 741 LGEGSRNIIATPGRLIDFLE 800
L G +IATPGRLID LE
Sbjct: 285 LRRGVEIVIATPGRLIDMLE 304
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 118 bits (284), Expect = 5e-27
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S V
Sbjct: 208 IAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGV 267
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
R+TC++GGAPK Q RDL RGVEI
Sbjct: 268 RSTCIYGGAPKGPQIRDLRRGVEI 291
Score = 93.1 bits (221), Expect = 2e-19
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 412
P+ F + F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 741 LGEGSRNIIATPGRLIDFLE 800
L G +IATPGRLID LE
Sbjct: 285 LRRGVEIVIATPGRLIDMLE 304
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/89 (50%), Positives = 60/89 (67%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
++ +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 676 HTSYVRNTCVFGGAPKREQARDLERGVEI 762
+S + TC++GGAPK Q RDLERG +I
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGADI 283
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVA 511
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/89 (50%), Positives = 60/89 (67%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
++ +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 676 HTSYVRNTCVFGGAPKREQARDLERGVEI 762
+S + TC++GGAPK Q RDLERG +I
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGADI 283
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVA 511
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/89 (50%), Positives = 60/89 (67%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
++ +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 676 HTSYVRNTCVFGGAPKREQARDLERGVEI 762
+S + TC++GGAPK Q RDLERG +I
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGADI 283
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/76 (44%), Positives = 45/76 (59%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVA 511
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
VA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 572 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGI 631
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
R V+GG+ +Q +L+RG EI
Sbjct: 632 RCVPVYGGSGVAQQISELKRGTEI 655
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 90.2 bits (214), Expect = 1e-18
Identities = 43/89 (48%), Positives = 61/89 (68%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
++ +A+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 676 HTSYVRNTCVFGGAPKREQARDLERGVEI 762
+S + TC++GGAPK Q ++LERG +I
Sbjct: 532 RSSRISCTCLYGGAPKGPQLKELERGADI 560
Score = 66.1 bits (154), Expect = 3e-11
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 266 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLVA 511
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 89.0 bits (211), Expect = 3e-18
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +
Sbjct: 271 IAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGL 330
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
R + V+GG K EQ ++L+ G EI
Sbjct: 331 RVSAVYGGMSKHEQFKELKAGCEI 354
Score = 72.1 bits (169), Expect = 4e-13
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 88.6 bits (210), Expect = 4e-18
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
VA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 439 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGI 498
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
V+GG+ +Q +L+RG EI
Sbjct: 499 ICVPVYGGSGVAQQISELKRGTEI 522
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 87.0 bits (206), Expect = 1e-17
Identities = 42/89 (47%), Positives = 59/89 (66%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
++ +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Query: 676 HTSYVRNTCVFGGAPKREQARDLERGVEI 762
+S + C++GGAPK Q +++ERGV+I
Sbjct: 326 KSSKISCACLYGGAPKGPQLKEIERGVDI 354
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 428 VKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V + G+ P+PIQAQ WPIAM +++VA
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 323 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 412
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 77.4 bits (182), Expect = 1e-14
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHT 681
+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 356 IAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHY 415
Query: 682 SYVRNTCVFGGAPKREQARDLERGVEI 762
R T + GG EQ + +G EI
Sbjct: 416 LGFRVTSIVGGQSIEEQGLKITQGCEI 442
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +2
Query: 329 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 747 EGSRNIIATPGRLIDFLE 800
+G +IATPGRLID LE
Sbjct: 438 QGCEIVIATPGRLIDCLE 455
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 74.1 bits (174), Expect = 1e-13
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 660
++ AQTGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 661 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
A F + + V+ +GG P +Q R+LERGV+I
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQQLRELERGVDI 290
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 IQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 430
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVA 511
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 73.3 bits (172), Expect = 2e-13
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 660
++ AQTGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 661 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
A F + + V+ +GG P +Q R+LERGV+I
Sbjct: 244 ARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDI 277
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVA 511
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 660
++ AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 661 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
A F + + V+ +GG P +Q R+LERG +I
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 660
++ AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 661 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
A F + + V+ +GG P +Q R+LERG +I
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGH 678
+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 157 IAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGE 216
Query: 679 TSYVRNTCVFGGAPKREQARDLERGVEI 762
+++ CV+GG+ K Q + GV+I
Sbjct: 217 PCGLKSICVYGGSSKGPQISAIRSGVDI 244
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 317 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 490
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 491 SGKNLV 508
G++L+
Sbjct: 150 DGRDLI 155
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 148 ARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAPS 204
Query: 691 RNT-CVFGGAPKREQARDLERGVEISL 768
+T C++GG P +Q R L+ GV++++
Sbjct: 205 LDTICLYGGTPIGQQMRQLDYGVDVAV 231
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 62.9 bits (146), Expect = 2e-10
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 600
KD G+ L ++ +A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 601 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEI 762
GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV I
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHI 232
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/89 (30%), Positives = 50/89 (56%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 421
G + +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 62.1 bits (144), Expect = 4e-10
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 606
K G+++ + L + ++ A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 607 IALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEISL 768
LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++++
Sbjct: 192 QCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAV 243
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAAD 669
+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q ++Q A
Sbjct: 189 IAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAP 248
Query: 670 FGHTSY--VRNTCVFGGAPKREQARDLERGVEI 762
Y +R+ GG R Q ++RGV I
Sbjct: 249 LVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHI 281
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/89 (28%), Positives = 47/89 (52%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 421
G + +P + P + K S + + R + V+G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+K G +PTPIQ QG P+ ++G++++
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMI 187
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGH 678
A+TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 140 ARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGG 199
Query: 679 TSYVRNTCVFGGAPKREQARDLERGVEI 762
+ + + C++GG Q L+RGV+I
Sbjct: 200 SLGLSSCCLYGGDSYPVQEGKLKRGVDI 227
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 687
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H +
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW 133
Query: 688 VRNTCVFGGAPKREQARDLERGVEI 762
+ V GG K ++ L +G+ I
Sbjct: 134 IVPGYVMGGEKKAKEKARLRKGISI 158
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 666
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 667 DFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
G + V GG P Q +++GVE+
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 239
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 308 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 481
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 482 IAMSGKNLVA 511
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 666
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 667 DFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
G + V GG P Q +++GVE+
Sbjct: 71 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 102
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGH 678
A+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--S 203
Query: 679 TSYVRNTCVFGGAPKREQARDLERGVEI 762
Y+ CV+GG Q L RGV++
Sbjct: 204 APYLSTVCVYGGVSYTIQQSALTRGVDV 231
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 678
+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 679 TSYVRNTCVFGGAPKREQARDLERGVEI 762
+ R+ V GG+ R Q L +++
Sbjct: 215 HARFRSILVSGGSRIRPQEDSLNNAIDM 242
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/84 (33%), Positives = 51/84 (60%)
Frame = +1
Query: 511 VAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 690
+A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +
Sbjct: 71 MARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 691 RNTCVFGGAPKREQARDLERGVEI 762
R + + GG +Q +L +G ++
Sbjct: 128 RVSLLVGGDSMEDQFEELTKGPDV 151
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 51.2 bits (117), Expect = 8e-07
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Frame = +1
Query: 505 SCVA--QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAA 666
SC+ Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 413 SCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCR 472
Query: 667 DFGHTSY-VRNTCVFGGAPKREQARDLERGVEI 762
+ R+ V GG +R Q +LE+GV++
Sbjct: 473 SISKSGVPFRSMVVTGGFRQRTQLENLEQGVDV 505
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 606
K+ G Q + + K+ A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 607 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 753
+V+ PTRELA Q + VA + + V GG +R +A+ + G
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASG 211
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 741 LGEGSRNIIATPGRLIDFLE 800
+ GS +IATPGRL+D L+
Sbjct: 208 IASGSNLVIATPGRLLDHLQ 227
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 50.0 bits (114), Expect = 2e-06
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 609
K+ G R + + + ++ A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 610 ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEI 762
LV+ PTRELA Q VA + H+ V V GG ++ +A L +GV +
Sbjct: 229 VLVICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEAEILAKGVNL 279
Score = 31.5 bits (68), Expect = 0.67
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/106 (32%), Positives = 52/106 (49%)
Frame = +1
Query: 427 CKDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 606
CK+ G+++ + + ++ +AQTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 607 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 744
ALV+ PTRELA Q+ + G +R + + GG Q L
Sbjct: 128 FALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 606
KD G + + L K+ A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 607 --IALVLAPTRELAQQ 648
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/102 (28%), Positives = 50/102 (49%)
Frame = +1
Query: 427 CKDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 606
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 607 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
L+L PTRELA QI + + + ++ + GG REQ
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 350 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT- 681
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 60 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTL 117
Query: 682 SYVRNTCVFGGAPKREQARDLE 747
V + + GG LE
Sbjct: 118 PNVNSVLLVGGREVEADMNTLE 139
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGD--G 603
KD G + + L K+ A+TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 604 PI-ALVLAPTRELAQQ 648
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 693
AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V G V+
Sbjct: 85 AQSGTGKTATFCSGVLQQLDISLVQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVK 139
Query: 694 NTCVFGGAPKREQARDLERGVEI 762
GG RE R L+ GV +
Sbjct: 140 AQACVGGTSVREDQRVLQSGVHV 162
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHV 160
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 439 GLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAL 615
G+++ S + K+ A+TGSGKTLAY+LP + + + + ++ P A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 616 VLAPTRELAQQI 651
+L P+REL QQ+
Sbjct: 125 ILVPSRELCQQV 136
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 317 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 496
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 497 KNLVA 511
K++VA
Sbjct: 84 KDVVA 88
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +1
Query: 493 WKEFSCVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 663
+K+ + A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 664 ADFGHT-SYVRNTCVFGGAPKREQARDLE 747
F T + V + + GG + + +E
Sbjct: 111 QPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHV 160
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 648
K+ A+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 332 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 499
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 500 NLVA 511
A
Sbjct: 180 ECFA 183
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 502 FSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
F+C A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 182 FAC-APTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 663
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Frame = +1
Query: 427 CKDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHI-----NNQPPIR 591
C+ G + + L + K+ +AQTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 592 RGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 732
R P A VL+PTRELA QI + G +R + GG + +Q
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQ 132
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 365 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +1
Query: 436 NGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 603
+G+ + + L++ K+ A+TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 604 PIALVLAPTRELAQQI 651
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/110 (22%), Positives = 49/110 (44%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G +R + + ++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
+++ PTRELA Q QV + G ++ GG ++ L + V +
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*LKRVPAK 535
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/110 (22%), Positives = 49/110 (44%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G +R + + ++ A+ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
+++ PTRELA Q QV + G ++ GG ++ L + V +
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHL 252
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*LKRVPAK 535
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +1
Query: 436 NGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 603
+G+ + + L++ K+ A+TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 604 PIALVLAPTRELAQQI 651
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 41.1 bits (92), Expect = 8e-04
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKT--LAYILPAIVHINNQPPIRRGDGP 606
D G ++ L ++ AQ+G+GKT +A + IV+I+++
Sbjct: 39 DYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ------ 92
Query: 607 IALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGV 756
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV
Sbjct: 93 -VLVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGV 141
Score = 34.7 bits (76), Expect = 0.072
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 377 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/66 (33%), Positives = 40/66 (60%)
Frame = +1
Query: 451 TDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 630
TD S++ + + ++ A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 631 RELAQQ 648
RELA Q
Sbjct: 153 RELAAQ 158
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 508 CV-AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 660
CV + TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 66 CVNSPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 39.5 bits (88), Expect = 0.003
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 439 GLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 618
G ++ A + ++ AQ+G+GKT L ++ + AL+
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ-----ALI 108
Query: 619 LAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEI 762
L+PTRELA Q ++ G H + + C+ GG E R LE GV +
Sbjct: 109 LSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHV 156
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 514 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 663
AQTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/110 (22%), Positives = 47/110 (42%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G ++ + + + A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
++L PTRELA Q QV + ++ GG R+ L + V +
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*LKRVPAK 535
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/110 (22%), Positives = 47/110 (42%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G ++ + + + A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
++L PTRELA Q QV + ++ GG R+ L + V +
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*LKRVPAK 535
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.008
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Frame = +1
Query: 484 SYVWKEFSCVAQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 618
+Y K+ A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 619 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
+ PTRELA Q+ + + V+ + GG +Q R L+ EI
Sbjct: 285 ITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEI 332
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/110 (22%), Positives = 47/110 (42%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G ++ + + + A+ G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 613 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEI 762
++L PTRELA Q QV + + GG R+ L + V +
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*LKRVPAK 535
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +1
Query: 496 KEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 675
K A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 35.5 bits (78), Expect = 0.041
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 609
D+G + + + + + C A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 610 ALVLAPTRELAQQI 651
ALVL TRELA QI
Sbjct: 117 ALVLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 35.5 bits (78), Expect = 0.041
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 433 DNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 609
D+G + + + + + C A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 610 ALVLAPTRELAQQI 651
ALVL TRELA QI
Sbjct: 117 ALVLCHTRELAYQI 130
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.3 bits (75), Expect = 0.096
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADF 672
TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
Query: 673 GHTSYVRNTCVFGGAPKREQARDLER 750
G + GGA + Q L++
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEALKK 241
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 508 CVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 651
C A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 5 CQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.5 bits (68), Expect = 0.67
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +1
Query: 430 KDNGLQRTDAYSSSRLADSYVWKEFSCVAQTGSGKTLAYILPAIVHINN----QPPIRRG 597
+D+G R + + K+ A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 598 DGP-----IALVLAPTRELAQQI 651
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 650 ICCANSLVGAKTKAIGPSPLRI 585
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 11 SKRIHSLNKHLQLNPKI 61
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 239 LGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 412
L FCF+Q +NF +P+ + +E Y N H+ T + + + + PD
Sbjct: 299 LVFCFVQSRRRNFLSAYPSSAGKE--RIESY-NYHQSTNKNNKPAESVNHTRRGSMPD 353
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 11 SKRIHSLNKHLQLNPKI 61
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,667,592
Number of Sequences: 28952
Number of extensions: 354232
Number of successful extensions: 1217
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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